Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DQN79_RS07600 Genome accession   NZ_LS483435
Coordinates   1497766..1498836 (+) Length   356 a.a.
NCBI ID   WP_041961370.1    Uniprot ID   A0A0B5CQC1
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492766..1503836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS07580 (NCTC11050_01443) - 1493536..1495353 (+) 1818 WP_041961367.1 SurA N-terminal domain-containing protein -
  DQN79_RS07585 (NCTC11050_01444) - 1495484..1496065 (+) 582 WP_041961368.1 hypothetical protein -
  DQN79_RS07590 (NCTC11050_01445) trxB 1496147..1497097 (+) 951 WP_041961369.1 thioredoxin-disulfide reductase -
  DQN79_RS07595 (NCTC11050_01446) - 1497175..1497666 (+) 492 WP_003770702.1 peptidylprolyl isomerase -
  DQN79_RS07600 (NCTC11050_01447) recA 1497766..1498836 (+) 1071 WP_041961370.1 recombinase RecA Machinery gene
  DQN79_RS07605 (NCTC11050_01448) - 1499075..1499803 (+) 729 WP_082019640.1 sugar ABC transporter permease -
  DQN79_RS07615 (NCTC11050_01450) argH 1500446..1501825 (-) 1380 WP_003770713.1 argininosuccinate lyase -
  DQN79_RS07620 (NCTC11050_01451) - 1501866..1502912 (+) 1047 WP_003770715.1 sensor histidine kinase -
  DQN79_RS07625 (NCTC11050_01452) trxA 1503039..1503371 (+) 333 WP_003770717.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38465.84 Da        Isoelectric Point: 4.7371

>NTDB_id=1024648 DQN79_RS07600 WP_041961370.1 1497766..1498836(+) (recA) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MADEKKSSKSEDKSKALAAALAQIEKQFGKGSIMKMDGSHQDEDLEVVSTGSLGLDLALGVGGLPRGRIVEIFGPESSGK
TTLCLETIAQCQKNGGVCAFIDAENAFDPIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPK
AEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRGLQIK
KGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQGKDNVRVWLKEN
PDVANEIDSKIRAAAGTNIEITEGVRDETDGEEPEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1024648 DQN79_RS07600 WP_041961370.1 1497766..1498836(+) (recA) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGGCAGACGAGAAAAAAAGCAGCAAATCGGAAGACAAAAGCAAAGCCTTGGCCGCAGCCTTGGCCCAAATCGAAAAACA
GTTCGGCAAAGGTTCCATTATGAAAATGGACGGCAGCCATCAGGATGAAGACCTCGAAGTCGTCTCTACCGGCTCGCTCG
GCCTCGATTTGGCGCTCGGCGTCGGCGGTTTGCCGCGCGGCCGCATTGTTGAAATTTTCGGCCCGGAATCTTCCGGTAAA
ACCACCCTGTGTCTGGAAACCATCGCCCAATGCCAGAAAAACGGCGGTGTGTGCGCCTTTATCGATGCCGAAAACGCCTT
CGACCCGATTTATGCGCGCAAGCTGGGCGTGAAAGTGGAAGAATTAATGGTTTCCCAGCCGGATACCGGCGAACAGGCAT
TGGAAATCTGCGATATGCTGGTGCGTTCCGGCGGCGTAGACATGGTGGTTATCGACTCGGTTGCCGCACTTGTGCCGAAA
GCGGAAATCGAAGGCGATATGGGCGACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAGGCACTGCGCAAACTGAC
CGGCCACATCAAAAAAACCAACACCTTGGTGGTATTCATCAACCAAATCCGCATGAAGATCGGCGTTATGTTCGGCAGCC
CGGAAACCACCACCGGCGGTAACGCCTTGAAGTTCTACGCATCCGTCCGCCTCGACATCCGCCGTGGCCTCCAAATTAAA
AAAGGCGACGACGTTATCGGCAACGAAACCAAAGTCAAAGTCATTAAAAACAAAGTTGCCCCGCCGTTCCGCCAGGCCGA
ATTCGATATCCTCTACGGCGAAGGCGTGAGCTGGGAAGGCGAATTGATAGACCTCGGCGTGAAATACGATATTGTTGAAA
AATCAGGCGCATGGTACAGCTACAACGGTGCGAAAATCGGTCAAGGCAAAGATAATGTACGCGTTTGGCTGAAGGAGAAT
CCCGATGTTGCAAACGAAATCGACAGCAAAATCCGGGCTGCCGCCGGTACCAATATCGAAATTACCGAAGGCGTGCGTGA
TGAAACCGACGGGGAAGAACCGGAAGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5CQC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

87.32

97.472

0.851
  recA Neisseria gonorrhoeae MS11

87.32

97.472

0.851
  recA Ralstonia pseudosolanacearum GMI1000

75.516

95.225

0.719
  recA Glaesserella parasuis strain SC1401

66.757

100

0.694
  recA Acinetobacter baylyi ADP1

68.696

96.91

0.666
  recA Acinetobacter nosocomialis M2

68.103

97.753

0.666
  recA Acinetobacter baumannii D1279779

67.529

97.753

0.66
  recA Pseudomonas stutzeri DSM 10701

71.827

90.73

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.118

90.449

0.643
  recA Vibrio cholerae strain A1552

71.118

90.449

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.875

94.663

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.244

96.629

0.621
  recA Helicobacter pylori 26695

66.566

93.258

0.621
  recA Helicobacter pylori strain NCTC11637

66.566

93.258

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

66.667

91.854

0.612
  recA Staphylococcus aureus strain ATCC 12600

63.717

95.225

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

62.883

91.573

0.576
  recA Lactococcus lactis subsp. cremoris KW2

62.006

92.416

0.573
  recA Streptococcus pneumoniae TIGR4

57.67

98.876

0.57
  recA Streptococcus pneumoniae R6

57.67

98.876

0.57
  recA Streptococcus pneumoniae R36A

57.67

98.876

0.57
  recA Streptococcus pneumoniae Rx1

57.67

98.876

0.57
  recA Streptococcus pneumoniae D39

57.67

98.876

0.57
  recA Streptococcus thermophilus LMD-9

57.55

98.596

0.567
  recA Streptococcus mitis NCTC 12261

58.721

96.629

0.567
  recA Streptococcus thermophilus LMG 18311

57.849

96.629

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.736

91.573

0.556
  recA Streptococcus mitis SK321

60.182

92.416

0.556
  recA Streptococcus pyogenes NZ131

59.697

92.697

0.553
  recA Streptococcus mutans UA159

59.394

92.697

0.551