Detailed information NTG1013884

Bioinformatically predicted

Overview

• Name: comEA
• Type: Machinery gene
• Locus tag: AADW08_RS05465
• Genome accession: NZ_CP159489
• Coordinates: 1073634..1073780 (-)
• Length: 48 a.a.
• NCBI ID: WP_353894947.1
• Uniprot ID: -
• Organism: Pediococcus pentosaceus strain PP04sPP04
• Function: dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1068634..1078780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AADW08_RS05440	rpsO	1069111..1069380 (-)	270	WP_002833449.1	30S ribosomal protein S15	-
AADW08_RS05445	rpsT	1069586..1069840 (+)	255	WP_002833450.1	30S ribosomal protein S20	-
AADW08_RS05450	holA	1069866..1070885 (-)	1020	WP_195751155.1	DNA polymerase III subunit delta	-
AADW08_RS05455	-	1070882..1072999 (-)	2118	WP_195751156.1	DNA internalization-related competence protein ComEC/Rec2	-
AADW08_RS05460	-	1073133..1073615 (-)	483	WP_011673523.1	ComE operon protein 2	-
AADW08_RS05465	comEA	1073634..1073780 (-)	147	WP_353894947.1	helix-hairpin-helix domain-containing protein	Machinery gene
AADW08_RS05470	-	1073783..1074340 (-)	558	WP_353894948.1	SLBB domain-containing protein	-
AADW08_RS05475	coaD	1074410..1074886 (-)	477	WP_002833455.1	pantetheine-phosphate adenylyltransferase	-
AADW08_RS05480	rsmD	1074891..1075442 (-)	552	WP_002833456.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
AADW08_RS05485	-	1075439..1075699 (-)	261	WP_002833457.1	DUF2129 domain-containing protein	-
AADW08_RS05490	-	1075701..1076909 (-)	1209	WP_195751157.1	FtsW/RodA/SpoVE family cell cycle protein	-

Sequence

Protein

• Length: 48 a.a.
• Molecular weight: 5382.04 Da
• Isoelectric Point: 4.3494

>NTDB_id=1013884 AADW08_RS05465 WP_353894947.1 1073634..1073780(-) (comEA) [Pediococcus pentosaceus strain PP04sPP04]
MNGVGDKKAEQIINYREQQGEFKSIEDLKQVQGIGDKIFEGLQDAITV

Nucleotide

• Length: 147 bp

>NTDB_id=1013884 AADW08_RS05465 WP_353894947.1 1073634..1073780(-) (comEA) [Pediococcus pentosaceus strain PP04sPP04]
TTGAATGGTGTAGGAGATAAAAAAGCTGAACAAATTATTAATTATCGTGAACAACAGGGCGAATTTAAATCCATTGAAGA
TTTAAAGCAAGTACAGGGGATTGGTGATAAAATTTTTGAAGGACTACAAGATGCAATTACTGTATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (2-47)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEA	Latilactobacillus sakei subsp. sakei 23K	64.583	100	0.646
comEA	Bacillus subtilis subsp. subtilis str. 168	54.167	100	0.542
comEA	Lactococcus lactis subsp. cremoris KW2	52.083	100	0.521
comEA/celA/cilE	Streptococcus mitis NCTC 12261	50	100	0.5
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	50	100	0.5
comEA/celA/cilE	Streptococcus pneumoniae Rx1	50	100	0.5
comEA/celA/cilE	Streptococcus pneumoniae R6	50	100	0.5
comEA/celA/cilE	Streptococcus pneumoniae D39	50	100	0.5
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50	100	0.5
comEA/celA/cilE	Streptococcus mitis SK321	50	100	0.5
comEA	Staphylococcus aureus MW2	50	95.833	0.479
comEA	Staphylococcus aureus N315	50	95.833	0.479
comA	Synechocystis sp. PCC 6803	48.889	93.75	0.458
comE1/comEA	Haemophilus influenzae Rd KW20	47.826	95.833	0.458
comEA	Acinetobacter baylyi ADP1	45.833	100	0.458
comEA	Streptococcus thermophilus LMD-9	45.833	100	0.458
comE	Neisseria gonorrhoeae MS11	43.75	100	0.438
comE	Neisseria gonorrhoeae MS11	43.75	100	0.438
comEA	Acinetobacter baumannii strain A118	52.5	83.333	0.438
comE	Neisseria gonorrhoeae MS11	43.75	100	0.438
comE	Neisseria gonorrhoeae MS11	43.75	100	0.438
comEA	Acinetobacter baumannii D1279779	50	83.333	0.417
comEA/comE1	Glaesserella parasuis strain SC1401	43.478	95.833	0.417
comEA	Legionella pneumophila str. Paris	54.286	72.917	0.396
comEA	Legionella pneumophila strain ERS1305867	54.286	72.917	0.396
comEA	Vibrio campbellii strain DS40M4	43.182	91.667	0.396
comEA	Vibrio parahaemolyticus RIMD 2210633	41.304	95.833	0.396
comEA	Vibrio cholerae strain A1552	50	75	0.375
comEA	Vibrio cholerae C6706	50	75	0.375