Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JOA52_RS03295 Genome accession   NZ_LR881953
Coordinates   765616..766692 (+) Length   358 a.a.
NCBI ID   WP_202590397.1    Uniprot ID   -
Organism   Streptomyces sp. KY75 isolate Streptomyces sp. KY75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 760616..771692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA52_RS03275 (STKY75_0737) - 760975..761559 (+) 585 WP_076968631.1 TetR/AcrR family transcriptional regulator -
  JOA52_RS03280 (STKY75_0738) - 761564..761974 (-) 411 WP_030570466.1 Fur family transcriptional regulator -
  JOA52_RS03285 (STKY75_0739) katG 762359..764614 (+) 2256 WP_030570463.1 catalase/peroxidase HPI -
  JOA52_RS03290 (STKY75_0740) - 764767..765276 (-) 510 WP_030570459.1 hypothetical protein -
  JOA52_RS03295 (STKY75_0741) recA 765616..766692 (+) 1077 WP_202590397.1 recombinase RecA Machinery gene
  JOA52_RS03300 (STKY75_0742) - 766833..767243 (-) 411 WP_051884069.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  JOA52_RS03305 (STKY75_0743) - 767366..767623 (-) 258 WP_030567571.1 agmatine deiminase family protein -
  JOA52_RS03310 (STKY75_0744) - 767790..769049 (-) 1260 WP_076968628.1 serine hydrolase domain-containing protein -
  JOA52_RS03315 (STKY75_0745) - 769099..769614 (-) 516 WP_030567567.1 hypothetical protein -
  JOA52_RS03320 (STKY75_0746) - 769868..770731 (+) 864 WP_202590398.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38036.31 Da        Isoelectric Point: 5.3176

>NTDB_id=1012449 JOA52_RS03295 WP_202590397.1 765616..766692(+) (recA) [Streptomyces sp. KY75 isolate Streptomyces sp. KY75]
MAGTDQEKALDTALAQIERKFGKGAVMRLGERPDEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKLGGSVAFIDAEHALDPEYAKKLGVDTDNLILSQPDNGEQALEITDILIRSGAIDLIVIDSVAALVPRAEIEGQMG
DSHMGLQARLMSQALRKITSALSQTRTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGLVRKAGAWYTYEGDQLGQGKENARTFLKDNPDLADEIE
KKILQKLGIDLSAKPAVADGTGSVPVPDTAPASAGNAA

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1012449 JOA52_RS03295 WP_202590397.1 765616..766692(+) (recA) [Streptomyces sp. KY75 isolate Streptomyces sp. KY75]
ATGGCAGGAACCGACCAAGAGAAGGCGCTGGACACCGCGCTCGCACAGATCGAGCGGAAATTCGGCAAGGGCGCGGTGAT
GCGCCTCGGTGAGCGGCCCGACGAGCCCATCGAGGTCATCCCTACGGGATCGACCGCCCTCGATGTCGCGCTCGGCGTCG
GCGGTCTGCCGCGTGGCCGTGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCGCAGAAGCTCGGCGGTTCGGTGGCGTTCATCGACGCCGAGCACGCGCTGGACCCCGAGTACGCCAAGAAGCT
CGGCGTCGACACCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCGCTCGAGATCACCGACATCCTGATCC
GCTCCGGCGCGATCGACCTGATCGTCATCGACTCCGTCGCGGCCCTGGTGCCCCGCGCCGAGATCGAGGGCCAGATGGGC
GACTCCCACATGGGTCTCCAGGCCCGCCTGATGAGCCAGGCCCTCCGCAAGATCACCAGCGCCCTCAGTCAGACGAGAAC
GACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTGATGTTCGGTTCGCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGGATCGAGACCCTCAAGGACGGCACCGACGCGGTCGGCAAC
CGGACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCCCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGTGAGGGCGGACTGATCGATATGGGCGTGGAGCACGGCTTGGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCACCTTCCTCAAGGACAACCCCGACCTCGCCGACGAGATCGAG
AAGAAGATCCTCCAGAAGCTCGGAATCGACCTGTCGGCGAAGCCTGCGGTCGCCGACGGCACGGGCAGCGTCCCGGTCCC
TGACACCGCCCCGGCCTCGGCGGGAAACGCCGCCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

65.385

94.413

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.385

94.413

0.617
  recA Acinetobacter baylyi ADP1

63.343

95.251

0.603
  recA Ralstonia pseudosolanacearum GMI1000

68.69

87.43

0.601
  recA Pseudomonas stutzeri DSM 10701

66.254

90.223

0.598
  recA Staphylococcus aureus strain ATCC 12600

65.644

91.061

0.598
  recA Acinetobacter baumannii D1279779

65.635

90.223

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

91.341

0.592
  recA Acinetobacter nosocomialis M2

65.325

90.223

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.015

90.223

0.587
  recA Vibrio cholerae strain A1552

65.015

90.223

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.222

91.899

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

91.341

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

62.918

91.899

0.578
  recA Streptococcus thermophilus LMD-9

60.526

95.531

0.578
  recA Helicobacter pylori strain NCTC11637

62.349

92.737

0.578
  recA Helicobacter pylori 26695

62.349

92.737

0.578
  recA Streptococcus mutans UA159

62.236

92.458

0.575
  recA Streptococcus pyogenes NZ131

62.424

92.179

0.575
  recA Glaesserella parasuis strain SC1401

63.354

89.944

0.57
  recA Streptococcus thermophilus LMG 18311

61.329

92.458

0.567
  recA Streptococcus mitis NCTC 12261

61.329

92.458

0.567
  recA Streptococcus mitis SK321

61.027

92.458

0.564
  recA Streptococcus pneumoniae R36A

61.027

92.458

0.564
  recA Streptococcus pneumoniae Rx1

61.027

92.458

0.564
  recA Streptococcus pneumoniae D39

61.027

92.458

0.564
  recA Streptococcus pneumoniae R6

61.027

92.458

0.564
  recA Streptococcus pneumoniae TIGR4

61.027

92.458

0.564
  recA Lactococcus lactis subsp. cremoris KW2

61.231

90.782

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

89.665

0.536