Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL201_RS09215 Genome accession   NZ_LR134380
Coordinates   2025346..2026392 (-) Length   348 a.a.
NCBI ID   WP_027221985.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pascullei strain NCTC12273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2020346..2031392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL201_RS09195 (NCTC12273_01848) - 2020584..2021777 (-) 1194 WP_027221981.1 RhoGAP domain-containing protein -
  EL201_RS09200 (NCTC12273_01849) - 2022013..2022210 (-) 198 WP_027221982.1 Thivi_2564 family membrane protein -
  EL201_RS09205 (NCTC12273_01850) alaS 2022301..2024883 (-) 2583 WP_027221983.1 alanine--tRNA ligase -
  EL201_RS09210 (NCTC12273_01851) recX 2024901..2025353 (-) 453 WP_027221984.1 recombination regulator RecX -
  EL201_RS09215 (NCTC12273_01852) recA 2025346..2026392 (-) 1047 WP_027221985.1 recombinase RecA Machinery gene
  EL201_RS09225 (NCTC12273_01853) - 2026698..2027633 (-) 936 WP_027221986.1 hypothetical protein -
  EL201_RS09230 (NCTC12273_01854) - 2027924..2028418 (-) 495 WP_027221987.1 CinA family protein -
  EL201_RS09235 (NCTC12273_01855) - 2028497..2028691 (-) 195 WP_027221988.1 hypothetical protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37916.52 Da        Isoelectric Point: 5.0776

>NTDB_id=1002497 EL201_RS09215 WP_027221985.1 2025346..2026392(-) (recA) [Legionella pneumophila subsp. pascullei strain NCTC12273]
MEENKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVI
AECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGS
ETRVKVVKNKVAPPFKVTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGKENVRLYLKENPQVAAELE
QQIRTELLEKKLSVLASSSEDLFETIDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1002497 EL201_RS09215 WP_027221985.1 2025346..2026392(-) (recA) [Legionella pneumophila subsp. pascullei strain NCTC12273]
ATGGAAGAGAATAAACAAAAAGCACTATCAGCGGCGCTTTCGCAAATTGAACGCCAATTTGGCAAAGGGTCCGTAATGCG
TATGGGAGATAGCACAGTATCTCGGGATATCGAAGCAATCTCTACTGGTTCATTAGGTCTTGATATTGCCTTAGGAATAG
GTGGTTTGCCAAAAGGCCGTATTGTTGAAATCTATGGCCCTGAGTCTTCAGGTAAAACAACGCTTACTCTTCAAGTGATC
GCTGAATGTCAAAAAATGGGTGGTACAGCAGCTTTTATCGATGCGGAACATGCTCTGGATCCAAGCTATGCTCAGAAACT
CGGTGTGAAGGTAGACGAGCTTTTGGTTTCTCAACCGGATACAGGCGAGCAAGCTCTGGAAATTACTGATATGTTGGTGC
GTTCTGCAGCAGTTGATGTAGTAATAATTGACTCAGTTGCCGCTTTGACTCCCAAAGCAGAAATTGAGGGAGAAATGGGT
GATTCTCATGTTGGTTTACAGGCAAGGCTGATGTCGCAAGCTCTGCGTAAATTGACTGCTAATATTAAACGTTCAAACAC
ACTGGTTATTTTTATTAACCAAATACGCATGAAAATTGGCGTGATGTTTGGTAGCCCTGAAACTACTACAGGGGGTAATG
CTTTGAAGTTTTATGCTTCGGTTCGTTTGGATATTCGTCGTATTGGTTCAATTAAAAAGGGTGAAGAAATATTAGGTAGT
GAAACCCGAGTTAAAGTAGTTAAAAATAAGGTAGCGCCGCCATTTAAAGTAACAGAATTTGATATTTTATATAACGAGGG
TATATCTCGTGAGAGTGAAATTATTAATCTGGGTGTTCAGTTGAATTTAATTGAGAAATCAGGTGCCTGGTACAGCTACA
AACAGGAAAAAATCGGGCAGGGCAAAGAAAATGTCAGATTATATTTGAAGGAAAACCCTCAAGTCGCTGCAGAGCTCGAA
CAACAAATCCGTACTGAACTGCTTGAAAAAAAATTGTCTGTGTTGGCTAGTTCATCAGAAGATCTTTTTGAGACTATAGA
TGACTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.093

98.563

0.75
  recA Acinetobacter baylyi ADP1

72

100

0.724
  recA Acinetobacter baumannii D1279779

74.695

94.253

0.704
  recA Acinetobacter nosocomialis M2

74.085

94.253

0.698
  recA Glaesserella parasuis strain SC1401

71.681

97.414

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.294

97.701

0.687
  recA Vibrio cholerae strain A1552

70.294

97.701

0.687
  recA Neisseria gonorrhoeae strain FA1090

73.148

93.103

0.681
  recA Neisseria gonorrhoeae MS11

73.148

93.103

0.681
  recA Ralstonia pseudosolanacearum GMI1000

74.679

89.655

0.67
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.45

98.276

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.865

95.69

0.621
  recA Helicobacter pylori strain NCTC11637

65.231

93.391

0.609
  recA Helicobacter pylori 26695

65.231

93.391

0.609
  recA Staphylococcus aureus strain ATCC 12600

64.832

93.966

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

92.241

0.603
  recA Streptococcus mitis SK321

60.856

93.966

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

61.3

92.816

0.569
  recA Streptococcus pneumoniae D39

60.55

93.966

0.569
  recA Streptococcus pneumoniae R36A

60.55

93.966

0.569
  recA Streptococcus pneumoniae Rx1

60.55

93.966

0.569
  recA Streptococcus pneumoniae R6

60.55

93.966

0.569
  recA Streptococcus pneumoniae TIGR4

60.55

93.966

0.569
  recA Streptococcus mitis NCTC 12261

60.245

93.966

0.566
  recA Lactococcus lactis subsp. cremoris KW2

60.308

93.391

0.563
  recA Streptococcus pyogenes NZ131

59.574

94.54

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

93.966

0.56
  recA Streptococcus mutans UA159

59.451

94.253

0.56
  recA Streptococcus thermophilus LMD-9

58.841

94.253

0.555
  recA Streptococcus thermophilus LMG 18311

58.841

94.253

0.555

Multiple sequence alignment