Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL144_RS06925 Genome accession   NZ_LR134327
Coordinates   1399737..1400798 (+) Length   353 a.a.
NCBI ID   WP_005704800.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1394737..1405798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL144_RS06905 (NCTC5906_01389) - 1395043..1395717 (+) 675 WP_005704805.1 phosphoglycolate phosphatase -
  EL144_RS06910 (NCTC5906_01390) trpS 1395839..1396843 (+) 1005 WP_005704804.1 tryptophan--tRNA ligase -
  EL144_RS06915 (NCTC5906_01391) - 1396977..1397594 (-) 618 WP_005704803.1 MarC family protein -
  EL144_RS06920 (NCTC5906_01392) - 1397675..1399600 (+) 1926 WP_005704802.1 ABC transporter ATP-binding protein -
  EL144_RS06925 (NCTC5906_01393) recA 1399737..1400798 (+) 1062 WP_005704800.1 recombinase RecA Machinery gene
  EL144_RS06930 (NCTC5906_01394) recX 1400877..1401335 (+) 459 WP_005704799.1 recombination regulator RecX -
  EL144_RS06935 (NCTC5906_01395) - 1401419..1401808 (+) 390 WP_005704798.1 RidA family protein -
  EL144_RS11585 (NCTC5906_01396) - 1401882..1402097 (-) 216 WP_232010615.1 c-type lysozyme inhibitor -
  EL144_RS06945 (NCTC5906_01397) recP/tkt 1402412..1404409 (-) 1998 WP_005704793.1 transketolase Machinery gene
  EL144_RS06950 (NCTC5906_01398) tal 1404543..1405496 (-) 954 WP_005704791.1 transaldolase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38025.50 Da        Isoelectric Point: 4.8857

>NTDB_id=1001750 EL144_RS06925 WP_005704800.1 1399737..1400798(+) (recA) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
MATQEEKQKALEAALGQIEKQFGKGAIMKLGDSQKLDIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAEAQKAGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDM
GDSHVGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYQNEKIGQGKTNAMKWLKDNPEQAKII
ESTLRDELLAHPESAITADSDNEAQGNIESDFE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1001750 EL144_RS06925 WP_005704800.1 1399737..1400798(+) (recA) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
ATGGCAACTCAAGAAGAAAAACAAAAAGCGCTCGAAGCCGCGTTAGGTCAAATCGAAAAACAATTTGGTAAAGGCGCTAT
CATGAAATTAGGCGACAGCCAAAAATTGGATATTGAAGCGATTTCCACCGGTTCCTTCGGTCTTGACTTAGCGTTAGGGA
TCGGCGGTTTGCCAATGGGACGTATCGTTGAAATTTTCGGACCGGAATCTTCCGGTAAAACCACTTTAACGCTTTCTGTT
ATTGCCGAAGCGCAAAAAGCGGGTAAAACCTGTGCCTTTATTGATGCGGAACATGCCTTAGACCCAATTTATGCCTCTAA
ACTGGGCGTGGATGTGAAAGAGTTGTTGGTTTCTCAACCGGACAACGGCGAGCAAGCGTTAGAAATCTGTGATGCCTTAG
TACGTTCCGGTGCGGTGGATGTGATTATTGTTGACTCCGTTGCAGCCTTAACGCCGAAAGCAGAAATTGAAGGCGACATG
GGCGATTCTCATGTGGGCTTGCAAGCACGTCTTATGTCCCAAGCGTTGCGTAAATTAACCGGACAAATTAAAAATGCCAA
CTGTTTAGTGATTTTCATCAACCAAATCCGTATGAAGATCGGCGTGATGTTTGGTAACCCGGAAACCACTACCGGTGGTA
ATGCACTGAAATTCTATGCCTCTGTGCGTTTGGATATTCGTCGTGTCGGTTCAATTAAAGAAGGCGATGAAGTGATTGGT
AACGAAACCCGCGTGAAAGTGGTGAAAAACAAAGTCGCACCGCCGTTCCGTCAAGTAGACTTCCAAATTCTGTATGGCGA
AGGTATTTCTAAAGAAAGCGAACTGATTGATTTAGGTGTGAAACACAAGCTCATCAGTAAAGCAGGCGCATGGTATGCTT
ATCAGAATGAGAAAATCGGTCAGGGCAAAACCAATGCGATGAAATGGTTAAAAGATAACCCTGAACAAGCGAAAATCATT
GAAAGCACGTTGCGTGATGAGTTATTGGCTCACCCGGAATCTGCGATTACGGCTGACTCTGACAACGAAGCGCAAGGTAA
TATCGAGAGTGATTTTGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75.072

98.867

0.742
  recA Pseudomonas stutzeri DSM 10701

74.419

97.45

0.725
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.061

93.484

0.711
  recA Vibrio cholerae strain A1552

76.061

93.484

0.711
  recA Neisseria gonorrhoeae MS11

71.429

97.167

0.694
  recA Neisseria gonorrhoeae strain FA1090

71.429

97.167

0.694
  recA Acinetobacter baylyi ADP1

68.605

97.45

0.669
  recA Acinetobacter nosocomialis M2

68.023

97.45

0.663
  recA Acinetobacter baumannii D1279779

71.077

92.068

0.654
  recA Ralstonia pseudosolanacearum GMI1000

71.875

90.652

0.652
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.45

96.884

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.964

94.334

0.603
  recA Helicobacter pylori 26695

63.473

94.618

0.601
  recA Helicobacter pylori strain NCTC11637

63.473

94.618

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

63.975

91.218

0.584
  recA Staphylococcus aureus strain ATCC 12600

63.467

91.501

0.581
  recA Streptococcus mitis SK321

58.551

97.734

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.468

92.635

0.569
  recA Streptococcus pneumoniae R36A

58.017

97.167

0.564
  recA Streptococcus pneumoniae D39

58.017

97.167

0.564
  recA Streptococcus pneumoniae R6

58.017

97.167

0.564
  recA Streptococcus pneumoniae TIGR4

58.017

97.167

0.564
  recA Streptococcus pneumoniae Rx1

58.017

97.167

0.564
  recA Streptococcus mitis NCTC 12261

60.494

91.785

0.555
  recA Streptococcus mutans UA159

60

92.068

0.552
  recA Streptococcus pyogenes NZ131

58.769

92.068

0.541
  recA Streptococcus thermophilus LMG 18311

58.769

92.068

0.541
  recA Streptococcus thermophilus LMD-9

58.769

92.068

0.541
  recA Latilactobacillus sakei subsp. sakei 23K

60.968

87.819

0.535
  recA Lactococcus lactis subsp. cremoris KW2

56.79

91.785

0.521