Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WN777_RS18720 Genome accession   NZ_CP150839
Coordinates   3660098..3661129 (-) Length   343 a.a.
NCBI ID   WP_001976711.1    Uniprot ID   A0A516QV33
Organism   Bacillus pacificus strain SG15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3655098..3666129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN777_RS18700 (WN777_18685) - 3655704..3656627 (-) 924 WP_139867009.1 dipeptidase -
  WN777_RS18705 (WN777_18690) spoVS 3656686..3656946 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  WN777_RS18710 (WN777_18695) - 3657095..3657889 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  WN777_RS18715 (WN777_18700) rny 3658054..3659616 (-) 1563 WP_000099773.1 ribonuclease Y -
  WN777_RS18720 (WN777_18705) recA 3660098..3661129 (-) 1032 WP_001976711.1 recombinase RecA Machinery gene
  WN777_RS18725 (WN777_18710) cinA 3661274..3662512 (-) 1239 WP_139867007.1 competence/damage-inducible protein CinA Machinery gene
  WN777_RS18730 (WN777_18715) pgsA 3662533..3663111 (-) 579 WP_076869526.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WN777_RS18735 (WN777_18720) - 3663175..3664101 (-) 927 WP_318160326.1 RodZ domain-containing protein -
  WN777_RS18740 (WN777_18725) - 3664123..3664908 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  WN777_RS18745 (WN777_18730) - 3665048..3665296 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  WN777_RS18750 (WN777_18735) ymfI 3665372..3666085 (-) 714 WP_139867003.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37297.34 Da        Isoelectric Point: 4.9868

>NTDB_id=972834 WN777_RS18720 WP_001976711.1 3660098..3661129(-) (recA) [Bacillus pacificus strain SG15]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEGMEDPSLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=972834 WN777_RS18720 WP_001976711.1 3660098..3661129(-) (recA) [Bacillus pacificus strain SG15]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACAGTTTCTAGTGGTTCTTTAGCACTTGATGTGGCATTAGGGGTAGGCGGAT
ACCCACGCGGCCGTATTATCGAGATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTTCATTACATGCAATTGCAGAG
GTACAGCGTCAAGGTGGACAAGCAGCATTCATCGATGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATCGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAAGCACTTGTACGAAGTG
GTGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCAAAAGCTGAGATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTCTAATGTCTCAAGCACTTCGTAAGTTATCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTTCGTCTTGAAGTGCGTCGTGCGGAGCAATTAAAACAAGGTAACGACATCGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTGGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGCGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAGTTCTTAAAAGAAAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGCGAAGATTCAGGTGCTGAAGGTATGGAAGATCCAAGTCTTCTCGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516QV33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.273

96.21

0.84
  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mutans UA159

68.155

97.959

0.668
  recA Streptococcus pneumoniae R6

69.394

96.21

0.668
  recA Streptococcus pneumoniae TIGR4

69.394

96.21

0.668
  recA Streptococcus mitis SK321

69.394

96.21

0.668
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Streptococcus pneumoniae Rx1

69.394

96.21

0.668
  recA Streptococcus pneumoniae D39

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.665

97.376

0.659
  recA Neisseria gonorrhoeae strain FA1090

64.012

98.834

0.633
  recA Neisseria gonorrhoeae MS11

64.012

98.834

0.633
  recA Neisseria gonorrhoeae MS11

64.012

98.834

0.633
  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Acinetobacter baylyi ADP1

60.87

100

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

95.044

0.606
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Helicobacter pylori strain NCTC11637

62.31

95.918

0.598
  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566

Multiple sequence alignment