Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   WN777_RS18725 Genome accession   NZ_CP150839
Coordinates   3661274..3662512 (-) Length   412 a.a.
NCBI ID   WP_139867007.1    Uniprot ID   -
Organism   Bacillus pacificus strain SG15     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3656274..3667512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN777_RS18705 (WN777_18690) spoVS 3656686..3656946 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  WN777_RS18710 (WN777_18695) - 3657095..3657889 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  WN777_RS18715 (WN777_18700) rny 3658054..3659616 (-) 1563 WP_000099773.1 ribonuclease Y -
  WN777_RS18720 (WN777_18705) recA 3660098..3661129 (-) 1032 WP_001976711.1 recombinase RecA Machinery gene
  WN777_RS18725 (WN777_18710) cinA 3661274..3662512 (-) 1239 WP_139867007.1 competence/damage-inducible protein CinA Machinery gene
  WN777_RS18730 (WN777_18715) pgsA 3662533..3663111 (-) 579 WP_076869526.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WN777_RS18735 (WN777_18720) - 3663175..3664101 (-) 927 WP_318160326.1 RodZ domain-containing protein -
  WN777_RS18740 (WN777_18725) - 3664123..3664908 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  WN777_RS18745 (WN777_18730) - 3665048..3665296 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  WN777_RS18750 (WN777_18735) ymfI 3665372..3666085 (-) 714 WP_139867003.1 elongation factor P 5-aminopentanone reductase -
  WN777_RS18755 (WN777_18740) yfmH 3666188..3667474 (-) 1287 WP_000411947.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45395.65 Da        Isoelectric Point: 5.0249

>NTDB_id=972835 WN777_RS18725 WP_139867007.1 3661274..3662512(-) (cinA) [Bacillus pacificus strain SG15]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=972835 WN777_RS18725 WP_139867007.1 3661274..3662512(-) (cinA) [Bacillus pacificus strain SG15]
ATGAATGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGTATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAGCGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGTGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGGGCAACTGTATTTGCGAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTACATTTTATTACCAGGACCACCGAAAGAGATGAAGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTGCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAGTTCTTCTACGGGTATGACCAAGAGTTTCTGCATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGGAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTAAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAACTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381

Multiple sequence alignment