Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SON02_RS06740 Genome accession   NZ_CP139211
Coordinates   1533966..1535111 (+) Length   381 a.a.
NCBI ID   WP_135028777.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1528966..1540111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS06735 (SON02_06720) cinA 1532728..1533930 (+) 1203 WP_135028775.1 competence/damage-inducible protein A Machinery gene
  SON02_RS06740 (SON02_06725) recA 1533966..1535111 (+) 1146 WP_135028777.1 recombinase RecA Machinery gene
  SON02_RS06745 (SON02_06730) spx 1535313..1535711 (+) 399 WP_075099515.1 transcriptional regulator Spx -
  SON02_RS06750 (SON02_06735) - 1535898..1536164 (+) 267 WP_135028779.1 IreB family regulatory phosphoprotein -
  SON02_RS06755 (SON02_06740) ruvX 1536164..1536583 (+) 420 WP_135028781.1 Holliday junction resolvase RuvX -
  SON02_RS06760 (SON02_06745) - 1536594..1536905 (+) 312 WP_135028784.1 DUF1292 domain-containing protein -
  SON02_RS06765 (SON02_06750) comR 1537974..1538885 (+) 912 WP_135028786.1 helix-turn-helix domain-containing protein Regulator
  SON02_RS06770 (SON02_06755) - 1539185..1539634 (+) 450 WP_167752643.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41047.83 Da        Isoelectric Point: 5.0444

>NTDB_id=908065 SON02_RS06740 WP_135028777.1 1533966..1535111(+) (recA) [Streptococcus sp. LysM4]
MAKKSSKKLEDITKKFGDERKKALDDALKTIEKDFGKGAIMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGSGDQKDTNVGKETKVKIVKNKIAPPFKEAVVEIMYGRGISQTGELIEIGSNLGIIKKAGAWYSYNDEKIGQGS
ENAKKYLEDHPEVFAEIDRKIRVHYGLIDDPELAEVVEKTEVPADIQDVVLDLDGGIELED

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=908065 SON02_RS06740 WP_135028777.1 1533966..1535111(+) (recA) [Streptococcus sp. LysM4]
TTGGCAAAAAAGTCAAGTAAAAAATTAGAGGACATTACTAAAAAATTTGGAGATGAGCGTAAGAAAGCTTTAGATGATGC
TTTGAAAACGATTGAAAAGGATTTTGGTAAGGGGGCAATTATGCGCCTTGGAGAGCGTGCTGAACAAAAAGTGCAGGTTA
TGAGCTCAGGAAGTTTGTCTATTGACATTGCCTTGGGAGCGGGTGGTTATCCGAAAGGACGGATCATCGAAATCTATGGT
CCAGAAAGTTCGGGTAAGACGACAGTGGCTCTCCATGCAGTCGCTCAAGCGCAAAAAGAAGGTGGCATTGCAGCCTTTAT
TGATGCAGAACATGCACTTGATCCCGCTTATGCCCAAGCCCTTGGTGTCAATATCGACGAATTGCTCTTGTCTCAACCGG
ACTCTGGAGAGCAGGGACTTGAAATCGCTGGTAAATTGATTGACTCAGGTGCAGTTGATCTTGTGGTTATTGACTCAGTT
GCCGCTCTTGTTCCGCGTGCAGAGATTGATGGTGAGATTGGCGATAGTCATGTTGGTTTGCAGGCACGTATGATGAGCCA
AGCGATGCGTAAACTATCTGCTTCTATCAATAAAACGAAGACGATTGCCATTTTCATTAACCAACTGCGTGAAAAAGTCG
GAGTGATGTTTGGGAATCCTGAGACAACTCCTGGTGGGCGTGCGCTTAAATTCTACGCATCTGTTCGTATGGATGTACGT
GGAAATACCCAAATCAAAGGTAGTGGTGATCAAAAAGACACCAATGTCGGAAAAGAAACGAAGGTTAAAATTGTTAAAAA
CAAGATTGCTCCTCCGTTCAAGGAAGCTGTTGTAGAAATCATGTACGGTCGAGGTATCTCACAAACAGGCGAATTAATTG
AGATTGGTAGCAATCTGGGGATCATAAAAAAAGCTGGTGCTTGGTATTCGTATAACGATGAGAAGATTGGTCAAGGATCA
GAGAATGCCAAAAAATACTTGGAAGATCATCCAGAAGTATTTGCGGAAATTGACCGCAAGATCCGCGTTCATTATGGTCT
AATCGATGATCCAGAATTAGCTGAAGTTGTTGAAAAGACAGAAGTTCCAGCAGACATTCAAGATGTTGTTCTTGATTTAG
ACGGTGGGATTGAATTAGAAGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

84.031

100

0.843
  recA Streptococcus pneumoniae TIGR4

82.902

100

0.84
  recA Streptococcus pneumoniae Rx1

82.902

100

0.84
  recA Streptococcus pneumoniae D39

82.902

100

0.84
  recA Streptococcus pneumoniae R6

82.902

100

0.84
  recA Streptococcus mitis NCTC 12261

83.508

100

0.837
  recA Streptococcus mutans UA159

82.552

100

0.832
  recA Streptococcus pyogenes NZ131

83.202

100

0.832
  recA Lactococcus lactis subsp. cremoris KW2

76.901

93.176

0.717
  recA Latilactobacillus sakei subsp. sakei 23K

67.761

87.927

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

66.869

86.352

0.577
  recA Vibrio cholerae strain A1552

59.195

91.339

0.541
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.195

91.339

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.238

89.501

0.53
  recA Acinetobacter baumannii D1279779

61.963

85.564

0.53
  recA Neisseria gonorrhoeae MS11

60.121

86.877

0.522
  recA Neisseria gonorrhoeae MS11

60.121

86.877

0.522
  recA Neisseria gonorrhoeae strain FA1090

60.121

86.877

0.522
  recA Acinetobacter baylyi ADP1

60.923

85.302

0.52
  recA Glaesserella parasuis strain SC1401

58.235

89.239

0.52
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

86.352

0.512
  recA Pseudomonas stutzeri DSM 10701

59.077

85.302

0.504
  recA Ralstonia pseudosolanacearum GMI1000

59.937

83.202

0.499
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.798

86.877

0.493
  recA Helicobacter pylori strain NCTC11637

56.364

86.614

0.488
  recA Helicobacter pylori 26695

56.364

86.614

0.488