Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   SON02_RS06765 Genome accession   NZ_CP139211
Coordinates   1537974..1538885 (+) Length   303 a.a.
NCBI ID   WP_135028786.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1532974..1543885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS06740 (SON02_06725) recA 1533966..1535111 (+) 1146 WP_135028777.1 recombinase RecA Machinery gene
  SON02_RS06745 (SON02_06730) spx 1535313..1535711 (+) 399 WP_075099515.1 transcriptional regulator Spx -
  SON02_RS06750 (SON02_06735) - 1535898..1536164 (+) 267 WP_135028779.1 IreB family regulatory phosphoprotein -
  SON02_RS06755 (SON02_06740) ruvX 1536164..1536583 (+) 420 WP_135028781.1 Holliday junction resolvase RuvX -
  SON02_RS06760 (SON02_06745) - 1536594..1536905 (+) 312 WP_135028784.1 DUF1292 domain-containing protein -
  SON02_RS06765 (SON02_06750) comR 1537974..1538885 (+) 912 WP_135028786.1 helix-turn-helix domain-containing protein Regulator
  SON02_RS06770 (SON02_06755) - 1539185..1539634 (+) 450 WP_167752643.1 GNAT family N-acetyltransferase -
  SON02_RS06775 (SON02_06760) - 1540017..1541267 (+) 1251 WP_135028790.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  SON02_RS06780 (SON02_06765) - 1541460..1543007 (+) 1548 WP_135028792.1 quinol oxidase -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 36038.86 Da        Isoelectric Point: 5.8466

>NTDB_id=908066 SON02_RS06765 WP_135028786.1 1537974..1538885(+) (comR) [Streptococcus sp. LysM4]
MKEEGFGDKVRRLREERGWTREQFCDEEQDLTVRQLTRIELGISKPTLTKIFFIAHRLGLSLFEVMPDYIDLPDQYLKLK
YDILRTPTYDQLDLIERRNAKSLEIYDHFYDMLPDIERLAIDALQSTIDVLETQSDIFGKDIIETYIPRIVWKQKYDVND
LLIIHLFIEHTYLSRMTKCSASRRMFLKLVSELPRQVVVMEPEELFVLRNVIFAAIRVLGAKGICEPIPTLFQGIHHIMQ
ITQDFQKYPIFSMLQWKYELLVHRDVQRAYSYCEEAIIFAKLMGNQHLMGQLHDQWRIDTLDT

Nucleotide


Download         Length: 912 bp        

>NTDB_id=908066 SON02_RS06765 WP_135028786.1 1537974..1538885(+) (comR) [Streptococcus sp. LysM4]
ATGAAAGAGGAAGGATTTGGAGATAAAGTTCGTAGGCTAAGAGAGGAACGTGGCTGGACTAGAGAACAGTTTTGTGATGA
GGAGCAGGATTTAACGGTACGACAGTTGACGCGGATTGAGTTAGGTATATCAAAACCAACCTTGACAAAAATATTTTTTA
TTGCGCACCGTTTGGGCTTATCTCTGTTTGAAGTGATGCCCGACTATATTGATTTGCCTGATCAATATTTAAAACTCAAG
TATGATATTTTGCGCACTCCAACCTATGATCAGCTCGATTTGATTGAAAGGCGCAATGCGAAGTCGCTCGAAATCTATGA
CCACTTTTACGATATGTTACCAGATATCGAGCGGCTTGCCATAGATGCACTACAGTCAACCATTGATGTGTTGGAAACCC
AATCAGATATTTTTGGTAAAGATATCATTGAAACCTATATTCCTCGAATAGTATGGAAGCAAAAATACGATGTGAATGAT
TTACTGATCATTCATCTCTTTATTGAACATACTTACTTGTCAAGGATGACAAAGTGTTCAGCGAGCAGAAGAATGTTTTT
AAAGCTAGTGTCAGAGTTACCTAGACAAGTAGTGGTGATGGAGCCGGAGGAGCTTTTTGTTCTGCGAAATGTCATCTTTG
CTGCTATCCGTGTATTAGGAGCAAAGGGAATCTGTGAACCTATTCCAACCTTATTTCAAGGGATTCATCATATCATGCAG
ATTACACAAGATTTTCAAAAATACCCGATTTTTAGTATGTTACAGTGGAAATATGAGCTCTTGGTACACCGAGATGTCCA
ACGTGCTTATAGCTATTGTGAAGAAGCAATCATTTTTGCGAAATTGATGGGAAATCAGCATCTGATGGGACAACTGCATG
ACCAGTGGCGGATTGATACACTTGATACCTAA

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-296)

Helix-turn-helix (HTH_3)

(10-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

48.837

99.34

0.485
  comR Streptococcus suis 05ZYH33

48.837

99.34

0.485
  comR Streptococcus suis D9

45.667

99.01

0.452
  comR Streptococcus mutans UA159

39.057

98.02

0.383