Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R5H38_RS00410 Genome accession   NZ_CP137602
Coordinates   71819..72973 (+) Length   384 a.a.
NCBI ID   WP_172036461.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66819..77973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS00395 ruvA 68770..69360 (+) 591 WP_289646189.1 Holliday junction branch migration protein RuvA -
  R5H38_RS00400 - 69980..70549 (+) 570 WP_217374495.1 DNA-3-methyladenine glycosylase I -
  R5H38_RS00405 cinA 70586..71767 (+) 1182 WP_217374496.1 competence/damage-inducible protein A Machinery gene
  R5H38_RS00410 recA 71819..72973 (+) 1155 WP_172036461.1 recombinase RecA Machinery gene
  R5H38_RS00415 spx 73187..73585 (+) 399 WP_217374497.1 transcriptional regulator Spx -
  R5H38_RS00420 - 73695..73961 (+) 267 WP_130554425.1 IreB family regulatory phosphoprotein -
  R5H38_RS00425 ruvX 73961..74380 (+) 420 WP_277837253.1 Holliday junction resolvase RuvX -
  R5H38_RS00430 - 74392..74712 (+) 321 WP_024392832.1 DUF1292 domain-containing protein -
  R5H38_RS00435 - 74965..75105 (+) 141 Protein_66 ISL3 family transposase -
  R5H38_RS00440 - 75135..75683 (+) 549 WP_277837254.1 nucleotidyltransferase family protein -
  R5H38_RS00445 comX/sigX 75868..76338 (+) 471 WP_277837255.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41221.95 Da        Isoelectric Point: 4.7868

>NTDB_id=899214 R5H38_RS00410 WP_172036461.1 71819..72973(+) (recA) [Streptococcus parasuis strain 221006]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDQKDQNVGKETKVKIVKNKVAPPFKEAIVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRIHYGLIEADEEQEVVEAEEKTIAVEDIQDVVLDLDGGIELED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=899214 R5H38_RS00410 WP_172036461.1 71819..72973(+) (recA) [Streptococcus parasuis strain 221006]
TTGGCTAAGAAACCAGGAAAAAAACTAGAAGATATTACAAAAAAATTTGGAGATGAACGTAAAAAAGCGCTGGATGATGC
ACTGAAATCTATTGAAAAAGATTTTGGTAAGGGAGCTGTCATGCGTCTCGGTGAACGTGCAGAGCAAAAGGTTCAAGTTA
TGAGCTCAGGAAGTCTGTCTATTGATATTGCGCTTGGGGCAGGTGGTTATCCCAAAGGGCGTATCATTGAAATTTATGGT
CCAGAAAGTTCCGGTAAGACAACAGTTGCTCTTCATGCTGTGGCTCAAGCGCAGAAAGAAGGTGGAATTGCAGCCTTTAT
TGATGCAGAACATGCTTTGGATCCAGCCTATGCAGCAGCCCTAGGGGTAAATATTGATGAATTACTTTTGTCGCAACCAG
ACTCAGGTGAACAAGGTCTTGAGATTGCAGGTAAGTTGATTGACTCTGGCGCGGTTGACTTAGTTGTCGTTGACTCTGTA
GCAGCCCTTGTACCTCGTGCAGAAATTGATGGTGATATTGGTGATAGTCACGTAGGTTTGCAAGCACGCATGATGAGTCA
GGCTATGCGTAAGTTGTCAGCTTCTATCAACAAGACCAAGACAATTGCTATCTTTATCAACCAGTTACGTGAAAAAGTTG
GGGTGATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCCCTTAAGTTCTATGCATCTGTTCGTATGGATGTCCGC
GGAAATACGCAGATCAAAGGTACTGGTGATCAAAAAGATCAAAACGTTGGTAAGGAAACCAAGGTCAAGATTGTGAAGAA
TAAGGTGGCTCCTCCGTTTAAGGAAGCTATCGTTGAAATCATGTATGGAGAGGGAATTTCTCGCACAGGTGAATTAATCG
AGATCGGTAGCAACCTTGGTATTATTCAAAAAGCAGGTGCCTGGTATTCTTATAATGGAGAAAAAATCGGACAAGGCTCT
GAAAATGCTAAGAAATTCTTGGCAGACAATCCAGCAATCTTTGATGAAATCGACCGTAAGATTCGTATTCACTATGGTTT
GATTGAAGCGGATGAAGAACAAGAAGTAGTGGAAGCAGAAGAAAAGACGATTGCTGTTGAAGATATACAAGATGTTGTAC
TTGATCTAGATGGTGGGATTGAGTTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.458

100

0.865
  recA Streptococcus pyogenes NZ131

85.677

100

0.857
  recA Streptococcus mitis NCTC 12261

83.377

100

0.836
  recA Streptococcus pneumoniae R6

82.902

100

0.833
  recA Streptococcus pneumoniae Rx1

82.902

100

0.833
  recA Streptococcus pneumoniae D39

82.902

100

0.833
  recA Streptococcus pneumoniae TIGR4

82.902

100

0.833
  recA Streptococcus mitis SK321

82.812

100

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.071

91.927

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

67.262

87.5

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

85.677

0.589
  recA Acinetobacter baylyi ADP1

58.192

92.188

0.536
  recA Neisseria gonorrhoeae MS11

61.934

86.198

0.534
  recA Neisseria gonorrhoeae MS11

61.934

86.198

0.534
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.198

0.534
  recA Acinetobacter baumannii D1279779

62.883

84.896

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

86.979

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

84.635

0.523
  recA Vibrio cholerae strain A1552

61.846

84.635

0.523
  recA Glaesserella parasuis strain SC1401

60.923

84.635

0.516
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.115

0.51
  recA Pseudomonas stutzeri DSM 10701

60

84.635

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

86.198

0.508
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.552

0.5
  recA Helicobacter pylori 26695

58.589

84.896

0.497
  recA Helicobacter pylori strain NCTC11637

58.589

84.896

0.497