Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   R5H38_RS00445 Genome accession   NZ_CP137602
Coordinates   75868..76338 (+) Length   156 a.a.
NCBI ID   WP_277837255.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 70868..81338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS00410 recA 71819..72973 (+) 1155 WP_172036461.1 recombinase RecA Machinery gene
  R5H38_RS00415 spx 73187..73585 (+) 399 WP_217374497.1 transcriptional regulator Spx -
  R5H38_RS00420 - 73695..73961 (+) 267 WP_130554425.1 IreB family regulatory phosphoprotein -
  R5H38_RS00425 ruvX 73961..74380 (+) 420 WP_277837253.1 Holliday junction resolvase RuvX -
  R5H38_RS00430 - 74392..74712 (+) 321 WP_024392832.1 DUF1292 domain-containing protein -
  R5H38_RS00435 - 74965..75105 (+) 141 Protein_66 ISL3 family transposase -
  R5H38_RS00440 - 75135..75683 (+) 549 WP_277837254.1 nucleotidyltransferase family protein -
  R5H38_RS00445 comX/sigX 75868..76338 (+) 471 WP_277837255.1 sigma-70 family RNA polymerase sigma factor Regulator
  R5H38_RS00460 - 77113..78390 (-) 1278 WP_217374498.1 replication-associated recombination protein A -
  R5H38_RS00465 - 78460..78797 (+) 338 Protein_70 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  R5H38_RS00470 - 78799..79269 (+) 471 WP_217374499.1 DUF3013 family protein -
  R5H38_RS00475 - 79298..79762 (+) 465 WP_398577300.1 NUDIX hydrolase -
  R5H38_RS00480 prmA 80323..81276 (+) 954 WP_277837258.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19009.82 Da        Isoelectric Point: 8.2997

>NTDB_id=899215 R5H38_RS00445 WP_277837255.1 75868..76338(+) (comX/sigX) [Streptococcus parasuis strain 221006]
MKFEQTYAKVSGIVHKARQEFYIKLWEKSDWDQEGMMVLYELLEKQPQLYDDKEKLYVYFKVKFRNHIKDVIRKQESYKR
KFDRMAHEDIHDLSHVVKSPGLVNDEFILLQDMLQSYRQQLKSEQLEQYEKLIAGQSFSGRKQMIRDLQDYLADFK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=899215 R5H38_RS00445 WP_277837255.1 75868..76338(+) (comX/sigX) [Streptococcus parasuis strain 221006]
ATGAAATTTGAACAAACTTACGCAAAGGTTAGTGGTATTGTACATAAGGCTCGTCAAGAATTTTATATCAAGTTATGGGA
AAAGTCAGACTGGGATCAAGAAGGAATGATGGTATTATATGAATTATTAGAAAAACAACCCCAGTTATATGATGATAAAG
AAAAATTATATGTATATTTTAAAGTAAAATTTAGAAATCATATAAAGGATGTTATACGCAAGCAAGAAAGTTACAAAAGA
AAATTTGACAGAATGGCACATGAAGACATCCATGACCTATCCCATGTTGTGAAATCACCTGGACTGGTTAACGATGAATT
TATTCTTCTGCAAGATATGTTACAGTCTTATCGGCAACAGTTAAAATCAGAACAACTAGAGCAATACGAAAAATTGATAG
CAGGGCAGAGTTTTAGTGGCCGAAAACAAATGATTCGTGATTTGCAAGACTATTTAGCAGATTTTAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

65.385

100

0.654
  comX/sigX Streptococcus suis isolate S10

64.744

100

0.647
  comX/sigX Streptococcus suis P1/7

64.744

100

0.647
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

47.097

99.359

0.468
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

47.097

99.359

0.468
  comX/sigX Streptococcus mutans UA159

46.753

98.718

0.462
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

43.137

98.077

0.423
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

42.484

98.077

0.417
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

41.401

100

0.417
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

41.83

98.077

0.41
  comX/comX1 Streptococcus pneumoniae Rx1

42.384

96.795

0.41
  comX/comX2 Streptococcus pneumoniae D39

42.384

96.795

0.41
  comX/comX1 Streptococcus pneumoniae D39

42.384

96.795

0.41
  comX/comX2 Streptococcus pneumoniae R6

42.384

96.795

0.41
  comX/comX1 Streptococcus pneumoniae R6

42.384

96.795

0.41
  comX/comX2 Streptococcus pneumoniae Rx1

42.384

96.795

0.41
  comX/comX2 Streptococcus pneumoniae TIGR4

41.722

96.795

0.404
  comX/comX1 Streptococcus pneumoniae TIGR4

41.722

96.795

0.404
  comX Streptococcus salivarius SK126

41.176

98.077

0.404
  comX/sigX Streptococcus salivarius strain HSISS4

41.176

98.077

0.404
  comX Streptococcus sobrinus strain NIDR 6715-7

40.523

98.077

0.397
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

40.523

98.077

0.397
  comX Streptococcus thermophilus LMG 18311

40.523

98.077

0.397
  comX Streptococcus thermophilus LMD-9

40.523

98.077

0.397
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

39.333

96.154

0.378
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

39.333

96.154

0.378
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

39.333

96.154

0.378
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

39.333

96.154

0.378
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

39.333

96.154

0.378
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

39.333

96.154

0.378