Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | R4712_RS06870 | Genome accession | NZ_CP137110 |
| Coordinates | 1350288..1351454 (+) | Length | 388 a.a. |
| NCBI ID | WP_044812435.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain 16H2041 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1336906..1368109 | 1350288..1351454 | within | 0 |
Gene organization within MGE regions
Location: 1336906..1368109
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R4712_RS06805 | - | 1336906..1339014 (-) | 2109 | WP_000701298.1 | peptidase domain-containing ABC transporter | - |
| R4712_RS06810 | - | 1339011..1339940 (-) | 930 | WP_000912954.1 | M50 family metallopeptidase | - |
| R4712_RS06815 | - | 1339921..1340625 (-) | 705 | WP_001033170.1 | flavodoxin family protein | - |
| R4712_RS06820 | - | 1340975..1343965 (-) | 2991 | WP_000875571.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| R4712_RS06825 | pneA2 | 1344081..1344269 (-) | 189 | WP_000786759.1 | two-peptide bacteriocin subunit PneA2 | - |
| R4712_RS06830 | pneA1 | 1344276..1344500 (-) | 225 | WP_044812438.1 | two-peptide bacteriocin subunit PneA1 | - |
| R4712_RS06835 | - | 1344603..1344773 (-) | 171 | WP_001227862.1 | PhrA family quorum-sensing system peptide | - |
| R4712_RS06840 | - | 1344965..1345828 (+) | 864 | WP_044812437.1 | helix-turn-helix domain-containing protein | - |
| R4712_RS06845 | comM | 1346211..1346831 (+) | 621 | WP_044812436.1 | hypothetical protein | Regulator |
| R4712_RS06850 | tsaE | 1346917..1347360 (+) | 444 | WP_000288230.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| R4712_RS06855 | - | 1347350..1347868 (+) | 519 | WP_000455536.1 | GNAT family N-acetyltransferase | - |
| R4712_RS06860 | brpA | 1347876..1348892 (+) | 1017 | WP_000239278.1 | biofilm formation/cell division transcriptional regulator BrpA | - |
| R4712_RS06865 | cinA | 1348977..1350233 (+) | 1257 | WP_000642704.1 | competence/damage-inducible protein A | Machinery gene |
| R4712_RS06870 | recA | 1350288..1351454 (+) | 1167 | WP_044812435.1 | recombinase RecA | Machinery gene |
| R4712_RS06875 | - | 1351760..1353130 (+) | 1371 | WP_044812432.1 | MATE family efflux transporter | - |
| R4712_RS06880 | lytA | 1353506..1354462 (+) | 957 | WP_000405234.1 | N-acetylmuramoyl-L-alanine amidase LytA | - |
| R4712_RS06885 | - | 1354808..1354969 (+) | 162 | WP_001055999.1 | helix-turn-helix domain-containing protein | - |
| R4712_RS06890 | - | 1354956..1355567 (+) | 612 | WP_224757294.1 | ImmA/IrrE family metallo-endopeptidase | - |
| R4712_RS06895 | - | 1355696..1356121 (+) | 426 | WP_000204067.1 | hypothetical protein | - |
| R4712_RS06900 | - | 1356529..1357323 (+) | 795 | WP_001101196.1 | hypothetical protein | - |
| R4712_RS06905 | - | 1357327..1357524 (+) | 198 | WP_044812849.1 | hypothetical protein | - |
| R4712_RS06910 | - | 1357514..1358065 (+) | 552 | WP_044812848.1 | hypothetical protein | - |
| R4712_RS06915 | - | 1358124..1358384 (+) | 261 | WP_001209197.1 | hypothetical protein | - |
| R4712_RS06920 | - | 1359122..1359925 (-) | 804 | WP_078372244.1 | IS5 family transposase | - |
| R4712_RS06925 | - | 1360084..1362111 (-) | 2028 | WP_044812833.1 | ABC transporter substrate-binding protein | - |
| R4712_RS06930 | - | 1362121..1362720 (-) | 600 | WP_001021235.1 | HAD family phosphatase | - |
| R4712_RS06935 | - | 1362767..1363468 (-) | 702 | WP_001054457.1 | MgtC/SapB family protein | - |
| R4712_RS06940 | - | 1363470..1365164 (-) | 1695 | WP_001232284.1 | iron ABC transporter permease | - |
| R4712_RS06945 | - | 1365176..1366180 (-) | 1005 | WP_000627602.1 | ABC transporter ATP-binding protein | - |
| R4712_RS06950 | - | 1366197..1367258 (-) | 1062 | WP_000475762.1 | extracellular solute-binding protein | - |
| R4712_RS06955 | - | 1367216..1368109 (-) | 894 | WP_001841509.1 | glycerophosphodiester phosphodiesterase family protein | - |
Sequence
Protein
Download Length: 388 a.a. Molecular weight: 42013.87 Da Isoelectric Point: 4.8403
>NTDB_id=895887 R4712_RS06870 WP_044812435.1 1350288..1351454(+) (recA) [Streptococcus pneumoniae strain 16H2041]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRFKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVTLDLGDELEIEIEE
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRFKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVTLDLGDELEIEIEE
Nucleotide
Download Length: 1167 bp
>NTDB_id=895887 R4712_RS06870 WP_044812435.1 1350288..1351454(+) (recA) [Streptococcus pneumoniae strain 16H2041]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATTAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTTTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTACGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATTAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTTTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTACGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.