Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   STYK_RS08955 Genome accession   NZ_AP024523
Coordinates   1794975..1796141 (-) Length   388 a.a.
NCBI ID   WP_238095613.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1789975..1801141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS08935 (STYK_17160) - 1791311..1791781 (-) 471 WP_261804922.1 MarR family winged helix-turn-helix transcriptional regulator -
  STYK_RS08940 (STYK_17170) - 1791995..1792640 (+) 646 Protein_1712 DUF4190 domain-containing protein -
  STYK_RS08945 (STYK_17180) - 1792690..1793406 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  STYK_RS08950 (STYK_17190) - 1793503..1794873 (-) 1371 WP_261804923.1 MATE family efflux transporter -
  STYK_RS08955 (STYK_17200) recA 1794975..1796141 (-) 1167 WP_238095613.1 recombinase RecA Machinery gene
  STYK_RS08960 (STYK_17210) cinA 1796196..1797452 (-) 1257 WP_223340070.1 competence/damage-inducible protein A Machinery gene
  STYK_RS08965 (STYK_17220) brpA 1797530..1798585 (-) 1056 WP_004256717.1 biofilm formation/cell division transcriptional regulator BrpA -
  STYK_RS08970 (STYK_17230) - 1798593..1799111 (-) 519 WP_000455549.1 GNAT family N-acetyltransferase -
  STYK_RS08975 (STYK_17240) tsaE 1799101..1799544 (-) 444 WP_000288249.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  STYK_RS08980 (STYK_17250) comM 1799640..1800269 (-) 630 WP_004239116.1 hypothetical protein Regulator
  STYK_RS08985 (STYK_17260) ndk 1800402..1800824 (-) 423 WP_004239114.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41689.40 Da        Isoelectric Point: 4.7095

>NTDB_id=85767 STYK_RS08955 WP_238095613.1 1794975..1796141(-) (recA) [Streptococcus toyakuensis strain TP1632]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLADNPEVFDEIDHQVRVQFGLIDGEEASVEGVETKKDDVVQADSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=85767 STYK_RS08955 WP_238095613.1 1794975..1796141(-) (recA) [Streptococcus toyakuensis strain TP1632]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCTGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAACTGATTGAGAAAGACTTTGGCAAGGGTTCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GTTCAGGTTCTTTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATTGAAATCTACGGACCA
GAGTCATCTGGTAAGACAACAGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGTATTGCTGCCTTTATCGA
TGCGGAACATGCCCTCGATCCAGCTTATGCTGCAGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCACAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAATTGATTGACTCAGGAGCTGTGGATCTTGTCGTGGTCGATTCAGTTGCT
GCCCTTGTCCCTCGTGCGGAAATTGATGGCGATATCGGAGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
TATGCGTAAGCTCGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTTTACGCATCAGTCCGTTTGGATGTTCGTGGA
AGCACACAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAAGAAACTAAAATCAAGGTTGTGAAAAACAA
GGTGGCTCCACCATTTAAGGAAGCCTTCGTTGAAATCATGTACGGAGAAGGGATTTCTAAGACTGGTGAGCTTTTGAAGA
TCGCAAGCGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTACTCTTACAAGGATGAGAAAATCGGGCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGATAACCCAGAAGTCTTTGATGAGATTGATCATCAAGTCCGTGTTCAATTTGGTTTGAT
TGATGGAGAAGAAGCTTCTGTAGAAGGTGTTGAAACTAAAAAAGATGACGTAGTTCAAGCAGATTCTGTGAATGAAGAAG
TGACACTTGACCTAGGCGACGAGCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

97.423

100

0.974
  recA Streptococcus mitis NCTC 12261

96.907

100

0.969
  recA Streptococcus pneumoniae Rx1

93.814

100

0.938
  recA Streptococcus pneumoniae D39

93.814

100

0.938
  recA Streptococcus pneumoniae R6

93.814

100

0.938
  recA Streptococcus pneumoniae TIGR4

93.814

100

0.938
  recA Streptococcus mutans UA159

83.896

99.227

0.832
  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807
  recA Lactococcus lactis subsp. cremoris KW2

78.693

90.722

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

66.479

91.495

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

85.052

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

83.247

0.536
  recA Glaesserella parasuis strain SC1401

60.882

87.629

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

84.536

0.526
  recA Acinetobacter baumannii D1279779

60.534

86.856

0.526
  recA Vibrio cholerae strain A1552

61.92

83.247

0.515
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

83.247

0.515
  recA Acinetobacter baylyi ADP1

61.043

84.021

0.513
  recA Neisseria gonorrhoeae MS11

61.635

81.959

0.505
  recA Neisseria gonorrhoeae MS11

61.635

81.959

0.505
  recA Neisseria gonorrhoeae strain FA1090

61.635

81.959

0.505
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

84.794

0.497
  recA Pseudomonas stutzeri DSM 10701

58.589

84.021

0.492
  recA Helicobacter pylori strain NCTC11637

57.751

84.794

0.49
  recA Helicobacter pylori 26695

57.751

84.794

0.49
  recA Ralstonia pseudosolanacearum GMI1000

59.621

81.701

0.487

Multiple sequence alignment