Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   STYK_RS08960 Genome accession   NZ_AP024523
Coordinates   1796196..1797452 (-) Length   418 a.a.
NCBI ID   WP_223340070.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1791196..1802452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS08935 (STYK_17160) - 1791311..1791781 (-) 471 WP_261804922.1 MarR family winged helix-turn-helix transcriptional regulator -
  STYK_RS08940 (STYK_17170) - 1791995..1792640 (+) 646 Protein_1712 DUF4190 domain-containing protein -
  STYK_RS08945 (STYK_17180) - 1792690..1793406 (-) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  STYK_RS08950 (STYK_17190) - 1793503..1794873 (-) 1371 WP_261804923.1 MATE family efflux transporter -
  STYK_RS08955 (STYK_17200) recA 1794975..1796141 (-) 1167 WP_238095613.1 recombinase RecA Machinery gene
  STYK_RS08960 (STYK_17210) cinA 1796196..1797452 (-) 1257 WP_223340070.1 competence/damage-inducible protein A Machinery gene
  STYK_RS08965 (STYK_17220) brpA 1797530..1798585 (-) 1056 WP_004256717.1 biofilm formation/cell division transcriptional regulator BrpA -
  STYK_RS08970 (STYK_17230) - 1798593..1799111 (-) 519 WP_000455549.1 GNAT family N-acetyltransferase -
  STYK_RS08975 (STYK_17240) tsaE 1799101..1799544 (-) 444 WP_000288249.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  STYK_RS08980 (STYK_17250) comM 1799640..1800269 (-) 630 WP_004239116.1 hypothetical protein Regulator
  STYK_RS08985 (STYK_17260) ndk 1800402..1800824 (-) 423 WP_004239114.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45168.64 Da        Isoelectric Point: 4.9077

>NTDB_id=85768 STYK_RS08960 WP_223340070.1 1796196..1797452(-) (cinA) [Streptococcus toyakuensis strain TP1632]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSSLLILTGGLGPTEDDLTKQT
LAKFLGKKLVFDPQAQAKLDVFFAQRPDYARTPNNERQAQLVEGATPLPNETGLAVGGILEVEGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIDNQTDPTLAPYAKTGEVTLRLSTKVSSQEEANQALDILENQI
LNRQTFEGLSLRKLCYGYGEETSLASIVVEELKRQGKTITAAESLTAGLFQARVADFSGASSIFKGGFVTYSLEEKSKML
DIPVKDLEEHGVVSEFTAQKMAEQARSKTQSDFGLSLTGVAGPDSLEGHPAGTVFIGLAQERGTEVIKINIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=85768 STYK_RS08960 WP_223340070.1 1796196..1797452(-) (cinA) [Streptococcus toyakuensis strain TP1632]
ATGAAAGCAGAAATCATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAATACCAATGCTCAGTTTTTGTCGGA
AAAACTAGCAGAGATTGGGGTAGATGTATATTTTCAGACGGCTGTAGGAGACAATGAAGCTCGTCTCTTATCCCTGCTTG
AGATTGCCAGTCAACGTAGCAGCCTGCTGATTTTGACAGGCGGTTTGGGGCCAACTGAGGACGATTTGACCAAACAAACC
CTGGCTAAATTCTTAGGGAAAAAATTAGTCTTCGATCCTCAGGCACAGGCGAAGTTGGATGTCTTTTTTGCCCAGAGACC
AGACTATGCCCGAACACCGAATAATGAAAGACAAGCTCAACTTGTAGAAGGGGCGACTCCGCTGCCAAATGAAACAGGAC
TGGCTGTGGGAGGAATATTAGAAGTCGAAGGAGTGACCTACGTTGTCCTTCCTGGTCCGCCAAGTGAATTGAAACCCATG
GTTTTAAACCAACTTCTACCCAAGTTGATGACAGGAAGCAAGCTGTATTCCCGAGTTCTTCGTTTCTTTGGAATTGGCGA
AAGTCAGTTGGTGACCATTTTGGCTGATTTGATTGACAATCAAACAGATCCGACCTTAGCGCCTTATGCCAAGACAGGAG
AAGTCACTCTGCGTCTGTCAACAAAGGTTAGCAGTCAAGAAGAGGCGAATCAAGCGCTGGATATCTTAGAAAATCAAATC
TTGAATCGTCAAACTTTTGAAGGCCTTTCTTTACGAAAACTTTGTTATGGTTATGGGGAAGAAACTAGTTTAGCTAGCAT
TGTGGTAGAAGAACTGAAAAGGCAAGGGAAAACTATCACGGCTGCAGAGAGTTTGACGGCTGGTCTTTTCCAAGCTAGGG
TAGCGGATTTTTCGGGTGCTTCAAGTATATTTAAGGGTGGTTTTGTGACCTATAGCTTGGAGGAAAAATCAAAAATGTTG
GATATTCCTGTCAAGGATTTGGAAGAGCACGGTGTGGTGTCTGAATTTACAGCTCAGAAGATGGCTGAGCAGGCACGAAG
CAAGACCCAGTCTGATTTTGGCCTTAGTTTGACTGGAGTGGCAGGACCAGATAGTCTAGAAGGACACCCAGCCGGGACAG
TCTTCATAGGCTTGGCTCAAGAGCGTGGAACTGAGGTCATCAAGATCAATATTGGAGGCAGAAGTCGAGCAGATGTACGT
CACATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

96.172

100

0.962
  cinA Streptococcus mitis SK321

95.694

100

0.957
  cinA Streptococcus pneumoniae TIGR4

92.823

100

0.928
  cinA Streptococcus pneumoniae Rx1

92.584

100

0.926
  cinA Streptococcus pneumoniae R6

92.584

100

0.926
  cinA Streptococcus pneumoniae D39

92.344

100

0.923
  cinA Streptococcus mutans UA159

71.053

100

0.711
  cinA Streptococcus suis isolate S10

54.567

99.522

0.543
  cinA Bacillus subtilis subsp. subtilis str. 168

46.172

100

0.462

Multiple sequence alignment