Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PXH68_RS09410 Genome accession   NZ_CP118733
Coordinates   2050848..2051993 (-) Length   381 a.a.
NCBI ID   WP_248027824.1    Uniprot ID   A0AA96ZZ52
Organism   Streptococcus suivaginalis strain 29896     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2045848..2056993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS09380 (PXH68_09365) - 2046693..2047922 (-) 1230 WP_248027820.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PXH68_RS09385 (PXH68_09370) comR 2048124..2049023 (-) 900 WP_248027822.1 helix-turn-helix domain-containing protein Regulator
  PXH68_RS09390 (PXH68_09375) - 2049137..2049463 (-) 327 WP_205030924.1 DUF1292 domain-containing protein -
  PXH68_RS09395 (PXH68_09380) ruvX 2049474..2049893 (-) 420 WP_158456249.1 Holliday junction resolvase RuvX -
  PXH68_RS09400 (PXH68_09385) - 2049893..2050159 (-) 267 WP_158456247.1 IreB family regulatory phosphoprotein -
  PXH68_RS09405 (PXH68_09390) spx 2050273..2050671 (-) 399 WP_158456245.1 transcriptional regulator Spx -
  PXH68_RS09410 (PXH68_09395) recA 2050848..2051993 (-) 1146 WP_248027824.1 recombinase RecA Machinery gene
  PXH68_RS09415 (PXH68_09400) cinA 2052043..2053224 (-) 1182 WP_248027827.1 competence/damage-inducible protein A Machinery gene
  PXH68_RS09420 (PXH68_09405) - 2053658..2053831 (+) 174 Protein_1817 helix-turn-helix domain-containing protein -
  PXH68_RS09425 (PXH68_09410) - 2053961..2054512 (-) 552 WP_248027831.1 DNA-3-methyladenine glycosylase I -
  PXH68_RS09430 (PXH68_09415) ruvA 2055081..2055671 (-) 591 WP_248027833.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40748.38 Da        Isoelectric Point: 4.8162

>NTDB_id=794653 PXH68_RS09410 WP_248027824.1 2050848..2051993(-) (recA) [Streptococcus suivaginalis strain 29896]
MAKKPGKKLEDITKKFGDERKKALDDALKTIEKDFGKGAIMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDQKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGQGISQTGELIEIGSNLGIIQKAGAWYSYNGDKIGQGS
ENAKKFLAENPAIFEEIDRKIRVHYGLIEDDQAEVQEEAAPAIDSVEDVVLDLDGGIELED

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=794653 PXH68_RS09410 WP_248027824.1 2050848..2051993(-) (recA) [Streptococcus suivaginalis strain 29896]
ATGGCAAAAAAACCTGGTAAAAAATTAGAAGATATTACGAAAAAATTTGGTGATGAGCGTAAAAAAGCGCTCGATGATGC
CTTAAAAACAATTGAAAAGGATTTTGGTAAAGGTGCCATTATGCGCCTTGGTGAGCGGGCTGAGCAAAAAGTGCAAGTCA
TGAGTTCAGGTAGCTTGTCCATTGATATTGCCTTGGGTGCTGGTGGTTATCCTAAAGGCCGTATCATTGAAATTTATGGC
CCTGAGTCATCAGGTAAAACAACCGTTGCTCTTCATGCGGTTGCACAGGCGCAAAAAGAAGGTGGAATTGCTGCTTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCTTATGCGGCAGCTCTTGGTGTCAACATTGACGAGTTGCTCTTGTCACAGCCAG
ACTCTGGTGAGCAAGGTCTTGAAATCGCAGGAAAGCTGATCGACTCTGGTGCAGTTGACTTGGTTGTTGTGGACTCTGTT
GCTGCCCTAGTCCCACGTGCAGAAATCGATGGTGATATTGGTGATAGTCACGTTGGTTTGCAGGCTCGGATGATGAGTCA
GGCTATGCGTAAGTTATCGGCTTCTATTAACAAAACCAAAACCATTGCAATCTTTATCAACCAGTTGCGTGAAAAAGTGG
GTGTTATGTTTGGTAACCCTGAAACAACACCTGGTGGCCGTGCGCTGAAATTCTATGCATCAGTTCGTATGGATGTTCGT
GGTAATACACAAATCAAGGGTACTGGTGACCAGAAAGATCAAAACGTCGGTAAAGAAACCAAGGTTAAGATTGTGAAGAA
CAAGGTAGCTCCTCCATTTAAGGAAGCTGTCGTGGAAATTATGTACGGTCAGGGGATTTCACAAACTGGTGAATTAATTG
AAATCGGTAGCAATCTTGGCATCATTCAGAAAGCAGGAGCTTGGTACTCTTACAACGGTGATAAGATTGGTCAAGGTTCT
GAAAATGCTAAGAAGTTCTTGGCAGAAAATCCAGCTATTTTTGAAGAAATTGATCGCAAGATTCGTGTGCATTATGGCTT
GATTGAAGATGACCAAGCGGAAGTTCAAGAAGAAGCTGCTCCAGCTATCGACAGCGTTGAAGATGTTGTTTTGGACTTGG
ATGGCGGCATCGAATTGGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

84.896

100

0.856
  recA Streptococcus pyogenes NZ131

84.777

100

0.848
  recA Streptococcus mitis NCTC 12261

84.293

100

0.845
  recA Streptococcus pneumoniae R6

82.902

100

0.84
  recA Streptococcus pneumoniae Rx1

82.902

100

0.84
  recA Streptococcus pneumoniae D39

82.902

100

0.84
  recA Streptococcus pneumoniae TIGR4

82.902

100

0.84
  recA Streptococcus mitis SK321

83.77

100

0.84
  recA Lactococcus lactis subsp. cremoris KW2

74.504

92.651

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

65.13

91.076

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

86.352

0.593
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60

91.864

0.551
  recA Vibrio cholerae strain A1552

60

91.864

0.551
  recA Acinetobacter baylyi ADP1

58.857

91.864

0.541
  recA Acinetobacter baumannii D1279779

63.19

85.564

0.541
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.877

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.486

86.352

0.522
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

84.777

0.52
  recA Glaesserella parasuis strain SC1401

60.615

85.302

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.267

90.289

0.517
  recA Pseudomonas stutzeri DSM 10701

59.692

85.302

0.509
  recA Helicobacter pylori strain NCTC11637

57.879

86.614

0.501
  recA Helicobacter pylori 26695

57.879

86.614

0.501
  recA Ralstonia pseudosolanacearum GMI1000

60.252

83.202

0.501