Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QQN96_RS18320 Genome accession   NZ_CP132022
Coordinates   3808850..3809587 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GON1437     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3803850..3814587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQN96_RS18305 (QQN96_18305) clpC 3804304..3806877 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QQN96_RS18310 (QQN96_18310) yfiH 3807007..3807738 (-) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  QQN96_RS18315 (QQN96_18315) rluD 3807735..3808715 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QQN96_RS18320 (QQN96_18320) comL 3808850..3809587 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QQN96_RS18325 (QQN96_18325) raiA 3809858..3810199 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QQN96_RS18330 (QQN96_18330) pheL 3810303..3810350 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QQN96_RS18335 (QQN96_18335) pheA 3810449..3811609 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  QQN96_RS18340 (QQN96_18340) tyrA 3811652..3812773 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QQN96_RS18345 (QQN96_18345) aroF 3812784..3813854 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QQN96_RS18350 (QQN96_18350) yfiL 3814063..3814428 (+) 366 WP_019842457.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=794653 QQN96_RS18320 WP_000197686.1 3808850..3809587(+) (comL) [Escherichia coli strain GON1437]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=794653 QQN96_RS18320 WP_000197686.1 3808850..3809587(+) (comL) [Escherichia coli strain GON1437]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376