Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   PXH68_RS09385 Genome accession   NZ_CP118733
Coordinates   2048124..2049023 (-) Length   299 a.a.
NCBI ID   WP_248027822.1    Uniprot ID   A0AA96VDD0
Organism   Streptococcus suivaginalis strain 29896     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2043124..2054023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS09375 (PXH68_09360) - 2044979..2046484 (-) 1506 WP_248027818.1 quinol oxidase -
  PXH68_RS09380 (PXH68_09365) - 2046693..2047922 (-) 1230 WP_248027820.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PXH68_RS09385 (PXH68_09370) comR 2048124..2049023 (-) 900 WP_248027822.1 helix-turn-helix domain-containing protein Regulator
  PXH68_RS09390 (PXH68_09375) - 2049137..2049463 (-) 327 WP_205030924.1 DUF1292 domain-containing protein -
  PXH68_RS09395 (PXH68_09380) ruvX 2049474..2049893 (-) 420 WP_158456249.1 Holliday junction resolvase RuvX -
  PXH68_RS09400 (PXH68_09385) - 2049893..2050159 (-) 267 WP_158456247.1 IreB family regulatory phosphoprotein -
  PXH68_RS09405 (PXH68_09390) spx 2050273..2050671 (-) 399 WP_158456245.1 transcriptional regulator Spx -
  PXH68_RS09410 (PXH68_09395) recA 2050848..2051993 (-) 1146 WP_248027824.1 recombinase RecA Machinery gene
  PXH68_RS09415 (PXH68_09400) cinA 2052043..2053224 (-) 1182 WP_248027827.1 competence/damage-inducible protein A Machinery gene
  PXH68_RS09420 (PXH68_09405) - 2053658..2053831 (+) 174 Protein_1817 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35107.10 Da        Isoelectric Point: 5.7538

>NTDB_id=794652 PXH68_RS09385 WP_248027822.1 2048124..2049023(-) (comR) [Streptococcus suivaginalis strain 29896]
MDDKEFGRRLRQLRREKGLTMEQLCEDEKEISVRQLGRIEAGKSKPTLSKMNSIAKRLGVSLYQLMPDYKPLPAAYLQIK
YDLLRTPTYGHPDLLQQRADLLQTVYEDYYDDLPEDEQVALDALQSTYDVIETKTSDFGHGIIAEYFHQIQIKDRFSLND
LLIIRLFVEHVRYHPDYSNAKEQLLALIKTLLTQQNHLAKADLFVLRDLLFAIVGLLGNWHVHHPMPDLFEAIDRIMQAT
QDFQKKAILSMLRWKYARHVEKSEEQAFHYYQEAIAFAQLIGNSHLVEQLEEDWKEETQ

Nucleotide


Download         Length: 900 bp        

>NTDB_id=794652 PXH68_RS09385 WP_248027822.1 2048124..2049023(-) (comR) [Streptococcus suivaginalis strain 29896]
ATGGACGACAAGGAATTCGGAAGACGCTTGCGGCAATTGCGGCGTGAAAAGGGCTTGACCATGGAACAGCTGTGCGAGGA
TGAAAAAGAAATCTCTGTCCGTCAATTGGGAAGGATTGAGGCTGGAAAATCCAAGCCAACCCTATCTAAGATGAATAGTA
TTGCCAAGCGCTTGGGAGTCAGTCTCTATCAGTTGATGCCTGACTACAAACCCTTGCCTGCCGCCTATCTCCAAATCAAG
TATGACTTGCTGCGGACACCGACTTATGGTCATCCAGACTTGCTGCAACAGCGGGCGGACTTGCTTCAGACGGTGTATGA
GGACTACTATGATGACTTGCCTGAGGATGAACAGGTCGCCTTGGATGCCCTCCAATCCACCTATGATGTGATCGAGACCA
AGACCAGTGATTTTGGGCATGGCATCATTGCTGAATATTTTCATCAAATTCAGATCAAGGATCGATTTAGCCTCAATGAC
TTGCTGATTATCCGACTGTTTGTGGAACATGTGCGCTATCATCCAGATTATTCAAACGCCAAAGAGCAGCTTTTGGCACT
GATTAAGACCTTGCTGACGCAGCAAAATCATTTGGCCAAGGCCGATTTGTTTGTTTTGCGAGACCTCTTGTTTGCGATTG
TTGGTCTTTTGGGAAATTGGCATGTCCACCATCCGATGCCGGATCTATTTGAAGCGATTGATCGTATCATGCAAGCCACC
CAGGATTTTCAGAAAAAAGCTATCTTGTCCATGTTGCGCTGGAAATACGCCCGACATGTGGAAAAATCAGAAGAGCAAGC
CTTTCATTATTATCAAGAAGCCATTGCTTTTGCTCAGTTGATTGGGAATTCGCATTTGGTAGAGCAATTGGAAGAAGATT
GGAAAGAGGAAACCCAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_19)

(7-69)

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

50.502

100

0.505
  comR Streptococcus suis 05ZYH33

50.502

100

0.505
  comR Streptococcus suis D9

46.026

100

0.465
  comR Streptococcus mutans UA159

41.472

100

0.415