Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   UKS_RS08510 Genome accession   NZ_AP021887
Coordinates   1697391..1698557 (-) Length   388 a.a.
NCBI ID   WP_156012726.1    Uniprot ID   A0A6H3SFX6
Organism   Streptococcus sp. 116-D4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1692391..1703557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS08480 (UKS_16410) - 1692598..1693059 (-) 462 WP_156012719.1 MarR family winged helix-turn-helix transcriptional regulator -
  UKS_RS09970 (UKS_16420) - 1693252..1693500 (+) 249 WP_332066846.1 hypothetical protein -
  UKS_RS08490 (UKS_16440) - 1693971..1694687 (-) 717 WP_156012721.1 YebC/PmpR family DNA-binding transcriptional regulator -
  UKS_RS08495 (UKS_16450) - 1694784..1696154 (-) 1371 WP_156012723.1 MATE family efflux transporter -
  UKS_RS08500 (UKS_16460) - 1696276..1696830 (+) 555 WP_156012725.1 GNAT family N-acetyltransferase -
  UKS_RS09975 - 1697033..1697226 (-) 194 Protein_1628 PspC domain-containing protein -
  UKS_RS08510 (UKS_16470) recA 1697391..1698557 (-) 1167 WP_156012726.1 recombinase RecA Machinery gene
  UKS_RS08515 (UKS_16480) cinA 1698612..1699868 (-) 1257 WP_156012728.1 competence/damage-inducible protein A Machinery gene
  UKS_RS08520 (UKS_16490) - 1699957..1701009 (-) 1053 WP_156012730.1 LCP family protein -
  UKS_RS08525 (UKS_16500) - 1701017..1701535 (-) 519 WP_049496202.1 GNAT family N-acetyltransferase -
  UKS_RS08530 (UKS_16510) tsaE 1701525..1701968 (-) 444 WP_156012732.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  UKS_RS08535 (UKS_16520) comM 1702233..1702865 (-) 633 WP_232049741.1 competence protein Regulator
  UKS_RS08540 (UKS_16530) ndk 1702996..1703418 (-) 423 WP_049496208.1 nucleoside-diphosphate kinase -

Sequence


Protein


Download         Length: 388 a.a.        Molecular weight: 41781.52 Da        Isoelectric Point: 4.8072

>NTDB_id=75380 UKS_RS08510 WP_156012726.1 1697391..1698557(-) (recA) [Streptococcus sp. 116-D4]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAIVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLSDHPEIFDEIDHQVRVQFGLIDGEEVSEQGMESKKDEAVQADSVNEEVTLDLGNELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=75380 UKS_RS08510 WP_156012726.1 1697391..1698557(-) (recA) [Streptococcus sp. 116-D4]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCAGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCAGAGCAAAAGGTGCAAGTGATGA
GTTCAGGTTCATTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGGCGTATCGTCGAAATCTATGGGCCA
GAGTCATCTGGTAAGACGACGGTTGCCCTTCATGCAGTTGCACAAGCACAGAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCTCTCGATCCAGCTTACGCTGCGGCTCTTGGTGTCAACATTGACGAGTTGCTCTTGTCACAACCAGACT
CAGGGGAGCAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCTGTAGATCTTGTCGTAGTCGACTCAGTTGCG
GCCCTTGTACCTCGTGCTGAAATTGATGGAGATATCGGAGATAGCCACGTTGGTTTGCAAGCTCGTATGATGAGCCAGGC
TATGCGTAAACTTGGTGCATCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAGTTGCGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTAAAATTCTATGCTTCAGTCCGCTTAGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGATACCAATGTCGGTAAGGAAACCAAGATTAAGGTTGTAAAAAACAA
GGTGGCTCCACCGTTTAAGGAAGCTATAGTTGAAATTATGTATGGAGAAGGGATTTCTAAGACTGGTGAACTTTTGAAAA
TCGCAAGTGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTACTCTTACAAGGATGAGAAAATTGGACAAGGTTCAGAG
AATGCTAAGAAATACTTGTCAGATCACCCAGAAATCTTTGATGAGATTGACCATCAAGTCCGTGTTCAATTTGGTTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGGTATGGAAAGCAAAAAAGATGAGGCAGTTCAAGCAGATTCTGTGAATGAAGAAG
TGACACTTGACTTAGGCAATGAGCTTGAAATCGAAATTGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6H3SFX6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

96.392

100

0.964

  recA Streptococcus mitis SK321

95.619

100

0.956

  recA Streptococcus pneumoniae Rx1

94.845

100

0.948

  recA Streptococcus pneumoniae D39

94.845

100

0.948

  recA Streptococcus pneumoniae R6

94.845

100

0.948

  recA Streptococcus pneumoniae TIGR4

94.845

100

0.948

  recA Streptococcus pyogenes NZ131

84.156

99.227

0.835

  recA Streptococcus mutans UA159

83.636

99.227

0.83

  recA Lactococcus lactis subsp. cremoris KW2

78.977

90.722

0.716

  recA Latilactobacillus sakei subsp. sakei 23K

67.335

89.948

0.606

  recA Bacillus subtilis subsp. subtilis str. 168

68.182

85.052

0.58

  recA Glaesserella parasuis strain SC1401

61.176

87.629

0.536

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.087

83.247

0.534

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.89

84.536

0.523

  recA Vibrio cholerae strain A1552

62.229

83.247

0.518

  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

83.247

0.518

  recA Acinetobacter baumannii D1279779

61.656

84.021

0.518

  recA Acinetobacter baylyi ADP1

61.656

84.021

0.518

  recA Neisseria gonorrhoeae MS11

61.95

81.959

0.508

  recA Neisseria gonorrhoeae MS11

61.95

81.959

0.508

  recA Neisseria gonorrhoeae strain FA1090

61.95

81.959

0.508

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.647

87.629

0.505

  recA Pseudomonas stutzeri DSM 10701

58.896

84.021

0.495

  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49

  recA Helicobacter pylori strain NCTC11637

57.447

84.794

0.487

  recA Helicobacter pylori 26695

57.447

84.794

0.487


Multiple sequence alignment