Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M9H69_RS08600 Genome accession   NZ_CP097843
Coordinates   1700499..1701647 (-) Length   382 a.a.
NCBI ID   WP_250315398.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1695499..1706647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS08575 (M9H69_08575) - 1696141..1696602 (-) 462 WP_000360512.1 MarR family winged helix-turn-helix transcriptional regulator -
  M9H69_RS08580 (M9H69_08580) - 1696796..1697485 (+) 690 WP_084875933.1 DUF308 domain-containing protein -
  M9H69_RS08585 (M9H69_08585) - 1697533..1698249 (-) 717 WP_000532900.1 YebC/PmpR family DNA-binding transcriptional regulator -
  M9H69_RS08590 (M9H69_08590) - 1698346..1699716 (-) 1371 WP_250315397.1 MATE family efflux transporter -
  M9H69_RS08595 (M9H69_08595) - 1699826..1700380 (+) 555 WP_000060288.1 GNAT family N-acetyltransferase -
  M9H69_RS08600 (M9H69_08600) recA 1700499..1701647 (-) 1149 WP_250315398.1 recombinase RecA Machinery gene
  M9H69_RS08605 (M9H69_08605) cinA 1701702..1702958 (-) 1257 WP_250315399.1 competence/damage-inducible protein A Machinery gene
  M9H69_RS08610 (M9H69_08610) - 1703032..1704072 (-) 1041 WP_250315400.1 LCP family protein -
  M9H69_RS08615 (M9H69_08615) - 1704077..1704598 (-) 522 WP_000455522.1 GNAT family N-acetyltransferase -
  M9H69_RS08620 (M9H69_08620) tsaE 1704588..1705031 (-) 444 WP_000288252.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  M9H69_RS08625 (M9H69_08625) comM 1705117..1705740 (-) 624 WP_000978030.1 hypothetical protein Regulator
  M9H69_RS08630 (M9H69_08630) ndk 1705877..1706296 (-) 420 WP_000438306.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40965.66 Da        Isoelectric Point: 4.8248

>NTDB_id=692950 M9H69_RS08600 WP_250315398.1 1700499..1701647(-) (recA) [Streptococcus oralis strain HP01]
MAKKPKKLDEISKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGSE
NAKKYLADHPEIFDEIDHQVRVQYGLIEDEEGTVLTSVAEDLAPNQEVTLDLGDGLEIEIED

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=692950 M9H69_RS08600 WP_250315398.1 1700499..1701647(-) (recA) [Streptococcus oralis strain HP01]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAGTTTGGAGCGGATCGTGAAAAAGCCTTGAACGATGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGCTCAATCATGCGTTTGGGCGAGCGTGCGGAGCAAAAAGTGCAAGTCATGA
GTTCAGGGTCCTTGGCTCTTGACATTGCTCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTACGGGCCA
GAGTCTTCTGGTAAGACAACGGTTGCCCTTCACGCTGTCGCGCAAGCACAGAAAGAAGGCGGTATCGCTGCCTTTATCGA
TGCGGAACATGCTCTTGACCCAGCCTATGCTGCAGCCCTTGGTGTGAACATTGATGAGTTACTCTTGTCACAGCCAGACT
CAGGTGAGCAAGGCCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCAGTTGACCTCGTCGTTATTGACTCAGTTGCG
GCCCTTGTACCACGTGCAGAAATCGATGGGGATATTGGAGACAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGCAAACTTGGTGCTTCTATCAATAAGACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACACCTGGTGGACGTGCTCTGAAATTCTACGCTTCAGTCCGTTTGGATGTTCGTGGA
AGCACACAAATCAAAGGAACTGGTGACCAAAAAGATACCAATGTTGGTAAGGAAACCAAAATCAAGGTCGTGAAAAACAA
GGTAGCTCCACCGTTTAAGGAAGCCTTCGTTGAAATCATGTACGGAGAAGGGATTTCTAAGACCGGTGAGCTCTTGAAGA
TTGCAAGTGATCTCGATATTATCCAAAAAGCAGGAGCATGGTACTCTTACAAGGGTGAAAAGATTGGGCAAGGATCTGAA
AATGCTAAGAAATACTTGGCAGATCACCCAGAGATTTTTGATGAGATTGACCATCAGGTTCGTGTTCAATACGGTTTGAT
TGAAGATGAAGAGGGAACCGTTCTTACTTCTGTCGCAGAAGATCTAGCACCTAACCAAGAAGTAACGCTTGACCTAGGCG
ATGGACTTGAAATCGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

93.264

100

0.942
  recA Streptococcus mitis SK321

93.229

100

0.937
  recA Streptococcus pneumoniae Rx1

90.464

100

0.919
  recA Streptococcus pneumoniae D39

90.464

100

0.919
  recA Streptococcus pneumoniae R6

90.464

100

0.919
  recA Streptococcus pneumoniae TIGR4

90.464

100

0.919
  recA Streptococcus pyogenes NZ131

85.752

99.215

0.851
  recA Streptococcus mutans UA159

84.817

100

0.848
  recA Lactococcus lactis subsp. cremoris KW2

78.571

91.623

0.72
  recA Bacillus subtilis subsp. subtilis str. 168

68.343

88.482

0.605
  recA Latilactobacillus sakei subsp. sakei 23K

69.605

86.126

0.599
  recA Glaesserella parasuis strain SC1401

58.056

94.241

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

84.555

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.89

85.864

0.531
  recA Neisseria gonorrhoeae MS11

61.212

86.387

0.529
  recA Neisseria gonorrhoeae MS11

61.212

86.387

0.529
  recA Neisseria gonorrhoeae strain FA1090

61.212

86.387

0.529
  recA Acinetobacter baumannii D1279779

61.963

85.34

0.529
  recA Acinetobacter baylyi ADP1

61.35

85.34

0.524
  recA Vibrio cholerae strain A1552

61.728

84.817

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

84.817

0.524
  recA Pseudomonas stutzeri DSM 10701

57.803

90.576

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.018

89.529

0.51
  recA Ralstonia pseudosolanacearum GMI1000

58.434

86.911

0.508
  recA Helicobacter pylori strain NCTC11637

57.447

86.126

0.495
  recA Helicobacter pylori 26695

57.447

86.126

0.495