Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SNAG_RS08435 Genome accession   NZ_AP017652
Coordinates   1664962..1666110 (-) Length   382 a.a.
NCBI ID   WP_096408404.1    Uniprot ID   A0A1E1GCG0
Organism   Streptococcus sp. NPS 308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1659962..1671110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS08410 (SNAG_1647) - 1660661..1661122 (-) 462 WP_096408392.1 MarR family winged helix-turn-helix transcriptional regulator -
  SNAG_RS08415 (SNAG_1648) - 1661313..1662017 (+) 705 WP_096408394.1 CD20-like domain-containing protein -
  SNAG_RS08420 (SNAG_1649) - 1662065..1662781 (-) 717 WP_096408397.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SNAG_RS08425 (SNAG_1650) - 1662878..1664248 (-) 1371 WP_096408399.1 MATE family efflux transporter -
  SNAG_RS08430 (SNAG_1651) - 1664358..1664912 (+) 555 WP_096408402.1 GNAT family N-acetyltransferase -
  SNAG_RS08435 (SNAG_1652) recA 1664962..1666110 (-) 1149 WP_096408404.1 recombinase RecA Machinery gene
  SNAG_RS08440 (SNAG_1653) cinA 1666165..1667421 (-) 1257 WP_096408407.1 competence/damage-inducible protein A Machinery gene
  SNAG_RS08445 (SNAG_1654) - 1667493..1668533 (-) 1041 WP_096408897.1 LCP family protein -
  SNAG_RS08450 (SNAG_1655) - 1668538..1669059 (-) 522 WP_096408409.1 GNAT family N-acetyltransferase -
  SNAG_RS08455 (SNAG_1656) tsaE 1669049..1669492 (-) 444 WP_096408412.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SNAG_RS08460 (SNAG_1657) comM 1669576..1670199 (-) 624 WP_096408900.1 hypothetical protein Regulator
  SNAG_RS08465 (SNAG_1658) ndk 1670334..1670753 (-) 420 WP_096408414.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40949.54 Da        Isoelectric Point: 4.8877

>NTDB_id=68370 SNAG_RS08435 WP_096408404.1 1664962..1666110(-) (recA) [Streptococcus sp. NPS 308]
MAKKPTKKLDEIGKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGS
ENAKKYLADHPEIFDAIDHQVRVQYGLIEDEEASDHSPVAEATSNQEVTLDLGDDLEIEIEE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=68370 SNAG_RS08435 WP_096408404.1 1664962..1666110(-) (recA) [Streptococcus sp. NPS 308]
ATGGCGAAAAAACCAACAAAAAAATTAGATGAAATCGGGAAAAAATTTGGAGCTGATCGTGAAAAAGCCTTGAACGATGC
TCTTAAATTGATTGAGAAAGACTTTGGTAAAGGCTCAATCATGCGCTTGGGTGAGCGTGCGGAGCAAAAAGTTCAAGTGA
TGAGCTCAGGCTCATTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGA
CCAGAATCATCTGGTAAGACAACGGTTGCCCTTCACGCTGTTGCGCAAGCACAGAAAGAAGGTGGTATCGCTGCCTTTAT
CGACGCGGAACATGCCCTTGATCCAGCCTATGCAGCAGCCCTTGGTGTGAATATTGACGAATTGCTCTTATCACAACCAG
ACTCAGGTGAGCAAGGTCTTGAAATTGCAGGGAAATTGATTGACTCAGGTGCAGTTGACCTAGTCGTTATCGACTCAGTT
GCGGCCCTTGTGCCTCGTGCAGAAATCGATGGGGATATCGGAGACAGCCACGTAGGTCTTCAAGCTCGTATGATGAGCCA
GGCTATGCGTAAACTAGGTGCTTCTATCAATAAGACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTG
GGGTCATGTTTGGAAACCCAGAAACAACTCCAGGTGGACGTGCTCTGAAATTCTACGCTTCAGTCCGTTTGGATGTTCGT
GGAAGTACGCAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAGGAAACCAAGATCAAGGTCGTGAAAAA
CAAGGTGGCTCCACCATTTAAGGAAGCCTTTGTTGAAATCATGTACGGAGAAGGGATTTCTAAGACTGGTGAGCTCTTGA
AGATTGCAAGTGACCTTGATATCATCCAAAAAGCAGGAGCTTGGTACTCTTACAAGGGTGAAAAAATCGGGCAAGGATCT
GAAAATGCTAAGAAATACTTGGCAGATCATCCGGAAATCTTTGACGCCATTGACCATCAAGTCCGTGTTCAATATGGCTT
GATTGAAGATGAAGAAGCTTCTGATCATAGTCCAGTAGCGGAGGCAACTTCTAACCAAGAAGTAACGCTTGACCTTGGCG
ATGATCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E1GCG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

93.506

100

0.942
  recA Streptococcus mitis NCTC 12261

93.506

100

0.942
  recA Streptococcus pneumoniae Rx1

90.488

100

0.921
  recA Streptococcus pneumoniae D39

90.488

100

0.921
  recA Streptococcus pneumoniae R6

90.488

100

0.921
  recA Streptococcus pneumoniae TIGR4

90.488

100

0.921
  recA Streptococcus mutans UA159

84.334

100

0.846
  recA Streptococcus pyogenes NZ131

85.224

99.215

0.846
  recA Lactococcus lactis subsp. cremoris KW2

77.465

92.932

0.72
  recA Bacillus subtilis subsp. subtilis str. 168

69.091

86.387

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

69.301

86.126

0.597
  recA Acinetobacter baumannii D1279779

60

90.314

0.542
  recA Glaesserella parasuis strain SC1401

59.249

90.576

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

84.555

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

85.864

0.529
  recA Acinetobacter baylyi ADP1

58.601

89.791

0.526
  recA Neisseria gonorrhoeae MS11

60.909

86.387

0.526
  recA Neisseria gonorrhoeae MS11

60.909

86.387

0.526
  recA Neisseria gonorrhoeae strain FA1090

60.909

86.387

0.526
  recA Vibrio cholerae strain A1552

61.728

84.817

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

84.817

0.524
  recA Pseudomonas stutzeri DSM 10701

55.714

91.623

0.51
  recA Ralstonia pseudosolanacearum GMI1000

56.891

89.267

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.576

86.387

0.497
  recA Helicobacter pylori 26695

57.143

86.126

0.492
  recA Helicobacter pylori strain NCTC11637

57.143

86.126

0.492

Multiple sequence alignment