Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SNAG_RS08440 Genome accession   NZ_AP017652
Coordinates   1666165..1667421 (-) Length   418 a.a.
NCBI ID   WP_096408407.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1661165..1672421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS08415 (SNAG_1648) - 1661313..1662017 (+) 705 WP_096408394.1 CD20-like domain-containing protein -
  SNAG_RS08420 (SNAG_1649) - 1662065..1662781 (-) 717 WP_096408397.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SNAG_RS08425 (SNAG_1650) - 1662878..1664248 (-) 1371 WP_096408399.1 MATE family efflux transporter -
  SNAG_RS08430 (SNAG_1651) - 1664358..1664912 (+) 555 WP_096408402.1 GNAT family N-acetyltransferase -
  SNAG_RS08435 (SNAG_1652) recA 1664962..1666110 (-) 1149 WP_096408404.1 recombinase RecA Machinery gene
  SNAG_RS08440 (SNAG_1653) cinA 1666165..1667421 (-) 1257 WP_096408407.1 competence/damage-inducible protein A Machinery gene
  SNAG_RS08445 (SNAG_1654) - 1667493..1668533 (-) 1041 WP_096408897.1 LCP family protein -
  SNAG_RS08450 (SNAG_1655) - 1668538..1669059 (-) 522 WP_096408409.1 GNAT family N-acetyltransferase -
  SNAG_RS08455 (SNAG_1656) tsaE 1669049..1669492 (-) 444 WP_096408412.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SNAG_RS08460 (SNAG_1657) comM 1669576..1670199 (-) 624 WP_096408900.1 hypothetical protein Regulator
  SNAG_RS08465 (SNAG_1658) ndk 1670334..1670753 (-) 420 WP_096408414.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45191.47 Da        Isoelectric Point: 4.8408

>NTDB_id=68371 SNAG_RS08440 WP_096408407.1 1666165..1667421(-) (cinA) [Streptococcus sp. NPS 308]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSNLVILTGGLGPTEDDLTKQT
LAKFLGKALVFDPQAQEKLDHFFAQRPDYARTPNNERQAQIVERATPLPNETGLAVGGVSEADGVTYVVLPGPPSELKPM
ILNQLLPKLMTGAKLYSRVLRFFGIGESQLVTILADLIDQQTDPTLAPYAKTGEVTLRLSTKAVSQEKADQALDILENQI
LDRQTFEGISLRDICYGYGEETSLASVVVEELKNRQKSITAAESLTAGLFQATLADFSGVSAIFNGGFVTYSLEEKSKML
DISEQELKEHGVVSEFTARKMAEQARLKTQSDYGVSLTGVAGPDSLEGHPAGTVFIGLAHAKGTEVIKANIAGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=68371 SNAG_RS08440 WP_096408407.1 1666165..1667421(-) (cinA) [Streptococcus sp. NPS 308]
ATGAAAGCAGAAATTATTGCTGTAGGAACAGAAATTTTGACAGGGCAGATTGTCAATACCAACGCCCAGTTCTTATCAGA
AAAGCTAGCAGAAATTGGAGTAGACGTCTACTTCCAAACAGCTGTTGGGGATAATGAAGCTCGTCTTTTGTCCTTGCTTG
AGATTGCGAGTCAACGTAGCAATCTTGTGATTTTGACAGGAGGTTTGGGGCCAACTGAAGATGATTTAACCAAACAAACG
CTGGCAAAATTTTTGGGAAAAGCCTTGGTGTTTGATCCTCAAGCCCAGGAAAAACTCGATCACTTTTTTGCTCAAAGACC
AGACTATGCGCGAACCCCCAATAATGAGAGGCAAGCTCAAATTGTGGAAAGAGCAACCCCATTGCCAAATGAGACAGGCT
TAGCTGTCGGAGGAGTGTCGGAAGCTGACGGCGTGACTTACGTGGTTCTTCCAGGACCTCCTAGTGAGTTGAAACCCATG
ATCCTAAATCAGCTCTTACCCAAGTTAATGACTGGTGCTAAGCTCTATTCCCGAGTGCTCCGTTTCTTTGGGATTGGTGA
AAGTCAGTTGGTGACTATTTTGGCGGACTTGATTGACCAACAAACTGATCCAACCTTGGCTCCTTATGCCAAAACGGGAG
AGGTAACCTTGCGCTTGTCTACAAAAGCAGTTAGTCAAGAAAAGGCTGATCAAGCACTGGATATCCTAGAAAATCAAATC
TTGGATCGCCAGACTTTTGAGGGAATTTCTCTACGAGACATCTGTTATGGATATGGGGAAGAAACCAGTCTAGCAAGTGT
CGTTGTAGAAGAGCTAAAGAACAGACAGAAAAGCATTACTGCAGCAGAGAGTTTGACGGCAGGCCTCTTTCAGGCTACTT
TAGCAGACTTTTCAGGTGTGTCAGCTATCTTTAATGGAGGATTTGTCACCTACAGCCTAGAGGAAAAGTCCAAGATGCTG
GATATTTCCGAGCAAGAGCTGAAAGAACACGGGGTCGTTTCTGAGTTTACCGCTCGAAAAATGGCAGAGCAGGCACGTCT
CAAGACTCAGTCTGACTACGGAGTTAGTTTGACGGGTGTGGCAGGACCAGATAGCCTAGAGGGGCATCCAGCTGGAACCG
TCTTTATCGGCTTGGCGCATGCAAAAGGAACAGAGGTTATCAAGGCTAATATCGCAGGACGGAGCCGTGCAGATGTTCGT
CATATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

89.474

100

0.895
  cinA Streptococcus pneumoniae TIGR4

89.234

100

0.892
  cinA Streptococcus pneumoniae Rx1

89.234

100

0.892
  cinA Streptococcus pneumoniae R6

89.234

100

0.892
  cinA Streptococcus pneumoniae D39

88.995

100

0.89
  cinA Streptococcus mitis NCTC 12261

88.756

100

0.888
  cinA Streptococcus mutans UA159

70.335

100

0.703
  cinA Streptococcus suis isolate S10

54.808

99.522

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

45.215

100

0.452

Multiple sequence alignment