Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K6969_RS00910 Genome accession   NZ_CP082205
Coordinates   169756..170907 (+) Length   383 a.a.
NCBI ID   WP_004195473.1    Uniprot ID   A0A0N0DNN1
Organism   Streptococcus suis strain AKJ18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 164756..175907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS00895 (K6969_00870) ruvA 166621..167211 (+) 591 WP_029173228.1 Holliday junction branch migration protein RuvA -
  K6969_RS00900 (K6969_00875) - 167917..168486 (+) 570 WP_029173227.1 DNA-3-methyladenine glycosylase I -
  K6969_RS00905 (K6969_00880) cinA 168523..169704 (+) 1182 WP_171942863.1 competence/damage-inducible protein A Machinery gene
  K6969_RS00910 (K6969_00885) recA 169756..170907 (+) 1152 WP_004195473.1 recombinase RecA Machinery gene
  K6969_RS00915 (K6969_00890) spx 171067..171465 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  K6969_RS00920 (K6969_00895) - 171572..171838 (+) 267 WP_004195477.1 IreB family regulatory phosphoprotein -
  K6969_RS00925 (K6969_00900) ruvX 171838..172257 (+) 420 WP_099780101.1 Holliday junction resolvase RuvX -
  K6969_RS00930 (K6969_00905) - 172269..172589 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  K6969_RS00935 (K6969_00910) - 172959..173498 (+) 540 WP_253911814.1 nucleotidyltransferase family protein -
  K6969_RS00940 (K6969_00915) - 173865..174986 (-) 1122 WP_015445098.1 IS110 family transposase -
  K6969_RS00945 (K6969_00920) comX/sigX 175205..175675 (+) 471 WP_029943166.1 transcriptional regulator Regulator

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40960.71 Da        Isoelectric Point: 4.8974

>NTDB_id=600024 K6969_RS00910 WP_004195473.1 169756..170907(+) (recA) [Streptococcus suis strain AKJ18]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEGEEAPEVVTEETPVATEEVQDVILDLDGGIELEE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=600024 K6969_RS00910 WP_004195473.1 169756..170907(+) (recA) [Streptococcus suis strain AKJ18]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGTTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGTTTGTCCATCGACATTGCGCTTGGGGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTATGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCTCTTCATGCGGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAACACGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTCTTGTCACAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATCGATGGCGATATTGGTGATAGTCATGTTGGTTTGCAGGCTCGTATGATGAGTCA
GGCCATGCGTAAACTCGGAGCATCCATCAACAAAACTAAGACAGTAGCTATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGTCGTGCGCTAAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGAACAGGCGATAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAAATCGTGAAGAA
CAAGGTGGCTCCACCGTTTAAAGAGGTTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGTAAGATACGTGTTCATTATGGATT
GATTGAAGGTGAGGAAGCACCAGAAGTTGTGACAGAGGAAACCCCTGTTGCAACTGAAGAAGTCCAAGATGTTATTTTAG
ACTTGGATGGCGGCATTGAATTAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0DNN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

84.896

100

0.851
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae R6

83.679

100

0.843
  recA Streptococcus pneumoniae Rx1

83.679

100

0.843
  recA Streptococcus pneumoniae D39

83.679

100

0.843
  recA Streptococcus pneumoniae TIGR4

83.679

100

0.843
  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836
  recA Streptococcus mitis SK321

83.508

99.739

0.833
  recA Lactococcus lactis subsp. cremoris KW2

74.504

92.167

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

85.901

0.582
  recA Acinetobacter baumannii D1279779

59.544

91.645

0.546
  recA Neisseria gonorrhoeae MS11

61.934

86.423

0.535
  recA Neisseria gonorrhoeae MS11

61.934

86.423

0.535
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.423

0.535
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

85.901

0.522
  recA Pseudomonas stutzeri DSM 10701

57.349

90.601

0.52
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.856

0.52
  recA Glaesserella parasuis strain SC1401

61.231

84.856

0.52
  recA Acinetobacter baylyi ADP1

61.231

84.856

0.52
  recA Vibrio cholerae strain A1552

61.231

84.856

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

84.334

0.514
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.602

89.295

0.514
  recA Ralstonia pseudosolanacearum GMI1000

60.252

82.768

0.499
  recA Helicobacter pylori strain NCTC11637

57.576

86.162

0.496
  recA Helicobacter pylori 26695

57.576

86.162

0.496