Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   K6969_RS00945 Genome accession   NZ_CP082205
Coordinates   175205..175675 (+) Length   156 a.a.
NCBI ID   WP_029943166.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 170205..180675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS00915 (K6969_00890) spx 171067..171465 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  K6969_RS00920 (K6969_00895) - 171572..171838 (+) 267 WP_004195477.1 IreB family regulatory phosphoprotein -
  K6969_RS00925 (K6969_00900) ruvX 171838..172257 (+) 420 WP_099780101.1 Holliday junction resolvase RuvX -
  K6969_RS00930 (K6969_00905) - 172269..172589 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  K6969_RS00935 (K6969_00910) - 172959..173498 (+) 540 WP_253911814.1 nucleotidyltransferase family protein -
  K6969_RS00940 (K6969_00915) - 173865..174986 (-) 1122 WP_015445098.1 IS110 family transposase -
  K6969_RS00945 (K6969_00920) comX/sigX 175205..175675 (+) 471 WP_029943166.1 transcriptional regulator Regulator
  K6969_RS00950 (K6969_00925) rpsJ 175929..176237 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  K6969_RS00955 (K6969_00930) rplC 176374..177000 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  K6969_RS00960 (K6969_00935) rplD 177025..177648 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  K6969_RS00965 (K6969_00940) - 177648..177947 (+) 300 WP_004195491.1 50S ribosomal protein L23 -
  K6969_RS00970 (K6969_00945) rplB 177965..178798 (+) 834 WP_171943042.1 50S ribosomal protein L2 -
  K6969_RS00975 (K6969_00950) rpsS 179049..179330 (+) 282 WP_000533766.1 30S ribosomal protein S19 -
  K6969_RS00980 (K6969_00955) rplV 179348..179692 (+) 345 WP_002936662.1 50S ribosomal protein L22 -
  K6969_RS00985 (K6969_00960) rpsC 179705..180358 (+) 654 WP_002936661.1 30S ribosomal protein S3 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19246.10 Da        Isoelectric Point: 8.8770

>NTDB_id=600025 K6969_RS00945 WP_029943166.1 175205..175675(+) (comX/sigX) [Streptococcus suis strain AKJ18]
MKFEKVYDSVKGIVNKARKEYYIKLWEKEDWDQEGMMTLFELLEDQPWLADEQEQLYCYFKVKFRNRVKDRVRRQESQKR
KFDRMPHEDIHDLSHVIQSPGLVNDELLMLRGALRDYRKKLSNDQLENYEKLISGQCFRGRREMIRDLQIYLKDFR

Nucleotide


Download         Length: 471 bp        

>NTDB_id=600025 K6969_RS00945 WP_029943166.1 175205..175675(+) (comX/sigX) [Streptococcus suis strain AKJ18]
ATGAAATTTGAAAAGGTCTATGATAGCGTAAAAGGGATTGTCAACAAGGCTCGAAAAGAGTACTATATTAAATTATGGGA
AAAGGAAGATTGGGATCAAGAGGGCATGATGACCTTATTTGAATTGTTGGAAGATCAACCGTGGTTAGCTGATGAGCAAG
AACAGTTGTATTGCTATTTTAAAGTGAAATTTAGAAATCGGGTCAAAGACCGTGTACGCAGACAAGAAAGTCAGAAGCGT
AAGTTTGACCGTATGCCGCATGAGGATATTCACGATTTATCTCACGTTATACAATCGCCAGGTTTAGTCAATGATGAGTT
GTTAATGTTGAGAGGAGCATTGAGGGATTATCGAAAAAAACTAAGCAATGACCAGCTTGAAAATTATGAAAAACTAATTA
GTGGCCAATGTTTCCGTGGTCGCCGTGAAATGATTCGCGATTTACAAATCTATTTAAAAGACTTTCGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

86.538

100

0.865
  comX/sigX Streptococcus suis isolate S10

85.897

100

0.859
  comX/sigX Streptococcus suis P1/7

85.897

100

0.859
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

49.032

99.359

0.487
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

49.032

99.359

0.487
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

47.059

98.077

0.462
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

46.405

98.077

0.455
  comX/comX2 Streptococcus pneumoniae Rx1

46.358

96.795

0.449
  comX/comX1 Streptococcus pneumoniae R6

46.358

96.795

0.449
  comX/comX2 Streptococcus pneumoniae D39

46.358

96.795

0.449
  comX/comX1 Streptococcus pneumoniae D39

46.358

96.795

0.449
  comX/comX2 Streptococcus pneumoniae R6

46.358

96.795

0.449
  comX/comX1 Streptococcus pneumoniae Rx1

46.358

96.795

0.449
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

45.752

98.077

0.449
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

45.098

98.077

0.442
  comX/comX2 Streptococcus pneumoniae TIGR4

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae TIGR4

45.695

96.795

0.442
  comX/sigX Streptococcus mutans UA159

43.506

98.718

0.429
  comX Streptococcus thermophilus LMD-9

41.83

98.077

0.41
  comX Streptococcus thermophilus LMG 18311

41.83

98.077

0.41
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

40.127

100

0.404
  comX/sigX Streptococcus salivarius strain HSISS4

41.176

98.077

0.404
  comX Streptococcus salivarius SK126

41.176

98.077

0.404
  comX Streptococcus sobrinus strain NIDR 6715-7

40.523

98.077

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40.667

96.154

0.391
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40.667

96.154

0.391
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40

96.154

0.385
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40

96.154

0.385
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40

96.154

0.385
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40

96.154

0.385