Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INT76_RS06935 Genome accession   NZ_CP073084
Coordinates   1344971..1346110 (-) Length   379 a.a.
NCBI ID   WP_212569765.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1339971..1351110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS06905 (INT76_06905) comR 1341215..1342114 (-) 900 WP_212569759.1 XRE family transcriptional regulator Regulator
  INT76_RS06910 (INT76_06910) - 1342339..1343103 (+) 765 WP_212569760.1 DpnI domain-containing protein -
  INT76_RS06915 (INT76_06915) - 1343189..1343509 (-) 321 WP_212569761.1 DUF1292 domain-containing protein -
  INT76_RS06920 (INT76_06920) ruvX 1343520..1343939 (-) 420 WP_212569762.1 Holliday junction resolvase RuvX -
  INT76_RS06925 (INT76_06925) - 1343939..1344205 (-) 267 WP_212569763.1 IreB family regulatory phosphoprotein -
  INT76_RS06930 (INT76_06930) spx 1344321..1344719 (-) 399 WP_212569764.1 transcriptional regulator Spx -
  INT76_RS06935 (INT76_06935) recA 1344971..1346110 (-) 1140 WP_212569765.1 recombinase RecA Machinery gene
  INT76_RS06940 (INT76_06940) cinA 1346166..1347347 (-) 1182 WP_212569766.1 competence/damage-inducible protein A Machinery gene
  INT76_RS06945 (INT76_06945) - 1347492..1348157 (-) 666 WP_212569767.1 type II CAAX endopeptidase family protein -
  INT76_RS06950 (INT76_06950) - 1348130..1348540 (-) 411 WP_212569768.1 helix-turn-helix transcriptional regulator -
  INT76_RS06955 (INT76_06955) - 1348614..1349174 (-) 561 WP_212569769.1 DNA-3-methyladenine glycosylase I -
  INT76_RS06960 (INT76_06960) ruvA 1349185..1349775 (-) 591 WP_212569770.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40456.17 Da        Isoelectric Point: 5.1090

>NTDB_id=557856 INT76_RS06935 WP_212569765.1 1344971..1346110(-) (recA) [Streptococcus oriscaviae strain HKU75]
MAKKPGKKLEDITKKFGDERKKALDDALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGEQKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGQGISQTGELIEIGTNLGIINKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFAEIDRKIRVHYGLIEDTEPSVTEEVPAPAGQDVILDLDGGIELED

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=557856 INT76_RS06935 WP_212569765.1 1344971..1346110(-) (recA) [Streptococcus oriscaviae strain HKU75]
GTGGCAAAAAAACCTGGTAAAAAATTAGAAGACATCACCAAAAAATTTGGTGACGAGCGTAAAAAGGCGTTGGATGATGC
CCTAAAAAACATTGAAAAAGATTTTGGTAAAGGTGCCATTATGCGCCTTGGTGAACGAGCAGAGCAAAAGGTGCAAGTCA
TGAGTTCAGGAAGCCTGTCCATCGACATCGCTCTTGGTGCTGGTGGCTATCCGAAAGGTCGTATCATTGAGATCTACGGA
CCAGAATCTTCTGGTAAGACAACCGTTGCCCTTCATGCTGTTGCTCAAGCTCAAAAAGAAGGCGGGATTGCTGCGTTTAT
CGATGCGGAACATGCCCTTGATCCAGCCTATGCGGCAGCGCTTGGTGTTAACATTGACGAATTGCTCCTTTCTCAACCAG
ACTCTGGTGAGCAGGGACTTGAAATTGCTGGAAAATTGATTGATTCTGGTGCAGTTGATCTGGTGGTAATCGACTCTGTT
GCGGCCCTTGTTCCGCGTGCAGAAATTGATGGGGACATCGGAGATAGTCATGTCGGCTTGCAGGCTCGGATGATGAGTCA
GGCTATGCGCAAGCTTTCAGCCTCTATTAACAAGACTAAGACGATTGCCATTTTCATCAACCAGTTGCGTGAGAAAGTAG
GAGTCATGTTTGGAAATCCGGAAACCACACCGGGAGGACGCGCTCTTAAATTCTATGCTTCTGTCCGCATGGATGTTCGC
GGCAATACCCAAATCAAAGGAACTGGCGAACAAAAGGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTCAAAAA
CAAGGTGGCTCCTCCTTTCAAAGAAGCTGTCGTGGAAATCATGTACGGTCAGGGAATTTCACAAACGGGTGAGCTAATTG
AAATTGGCACGAATTTGGGTATCATCAATAAGGCGGGTGCTTGGTACTCATACAATGGCGAGAAGATTGGCCAAGGTTCT
GAAAATGCCAAGAAATTCTTGGCAGATAACCCAGCTATCTTTGCTGAAATTGATCGTAAAATTCGCGTTCACTACGGCTT
GATTGAAGATACAGAACCTTCTGTAACTGAAGAAGTTCCTGCCCCAGCAGGTCAGGACGTCATTTTGGATCTAGATGGTG
GCATCGAGTTGGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

84.896

100

0.86
  recA Streptococcus pyogenes NZ131

84.697

100

0.847
  recA Streptococcus mitis SK321

83.246

100

0.839
  recA Streptococcus mitis NCTC 12261

82.723

100

0.834
  recA Streptococcus pneumoniae Rx1

81.443

100

0.834
  recA Streptococcus pneumoniae D39

81.443

100

0.834
  recA Streptococcus pneumoniae R6

81.443

100

0.834
  recA Streptococcus pneumoniae TIGR4

81.443

100

0.834
  recA Lactococcus lactis subsp. cremoris KW2

74.788

93.14

0.697
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

67.576

87.071

0.588
  recA Neisseria gonorrhoeae strain FA1090

61.631

87.335

0.538
  recA Neisseria gonorrhoeae MS11

61.631

87.335

0.538
  recA Neisseria gonorrhoeae MS11

61.631

87.335

0.538
  recA Acinetobacter baumannii D1279779

61.963

86.016

0.533
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

85.752

0.53
  recA Vibrio cholerae strain A1552

61.846

85.752

0.53
  recA Acinetobacter baylyi ADP1

60.923

85.752

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.182

86.807

0.522
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

85.224

0.52
  recA Ralstonia pseudosolanacearum GMI1000

59.271

86.807

0.515
  recA Glaesserella parasuis strain SC1401

60

85.752

0.515
  recA Pseudomonas stutzeri DSM 10701

59.077

85.752

0.507
  recA Helicobacter pylori strain NCTC11637

56.677

88.918

0.504
  recA Helicobacter pylori 26695

56.677

88.918

0.504
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

87.335

0.504