Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   INT76_RS06905 Genome accession   NZ_CP073084
Coordinates   1341215..1342114 (-) Length   299 a.a.
NCBI ID   WP_212569759.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1336215..1347114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS06890 (INT76_06890) - 1337542..1339098 (-) 1557 WP_212569757.1 quinol oxidase -
  INT76_RS06895 (INT76_06895) - 1339321..1339716 (-) 396 WP_212569758.1 hypothetical protein -
  INT76_RS06900 (INT76_06900) - 1339769..1340950 (-) 1182 WP_212573040.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  INT76_RS06905 (INT76_06905) comR 1341215..1342114 (-) 900 WP_212569759.1 XRE family transcriptional regulator Regulator
  INT76_RS06910 (INT76_06910) - 1342339..1343103 (+) 765 WP_212569760.1 DpnI domain-containing protein -
  INT76_RS06915 (INT76_06915) - 1343189..1343509 (-) 321 WP_212569761.1 DUF1292 domain-containing protein -
  INT76_RS06920 (INT76_06920) ruvX 1343520..1343939 (-) 420 WP_212569762.1 Holliday junction resolvase RuvX -
  INT76_RS06925 (INT76_06925) - 1343939..1344205 (-) 267 WP_212569763.1 IreB family regulatory phosphoprotein -
  INT76_RS06930 (INT76_06930) spx 1344321..1344719 (-) 399 WP_212569764.1 transcriptional regulator Spx -
  INT76_RS06935 (INT76_06935) recA 1344971..1346110 (-) 1140 WP_212569765.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35295.56 Da        Isoelectric Point: 4.5690

>NTDB_id=557855 INT76_RS06905 WP_212569759.1 1341215..1342114(-) (comR) [Streptococcus oriscaviae strain HKU75]
MDNKEFGLKIRDLREKLCFTQEQFCEDETKLSIRQLTRIEAGTSKPTFSTINYIAGRLGMTLYELMPDYIELPDRYKILK
YDILRTPTYGEEEMLDRRDSQLTEIYDDYYALLSEEERVAVDTIQSTIDAFESETDLYGRDILDKYLQKILTKEHYSVND
LLIIRLFIEHIRYKETDSDSFQIFLTLVKQLPEHVTKIASNDLFVLRDVLLVIVSVLGSKRLYTYLPGLFSSLDDILKIS
QDFQKKAILSMLKWKYELFVNKDKEKAIALYEEAIIFANLLENDFLVEKLKESWKLDNE

Nucleotide


Download         Length: 900 bp        

>NTDB_id=557855 INT76_RS06905 WP_212569759.1 1341215..1342114(-) (comR) [Streptococcus oriscaviae strain HKU75]
GTGGACAACAAAGAGTTTGGGTTAAAAATTCGTGATTTGCGAGAGAAGCTATGCTTTACACAGGAACAATTTTGTGAGGA
TGAAACAAAGCTATCCATTCGTCAATTGACTCGTATTGAGGCTGGTACATCTAAGCCAACCTTCTCCACTATCAACTATA
TTGCCGGTCGATTAGGAATGACACTTTACGAACTCATGCCAGATTATATAGAGTTGCCGGATAGATATAAAATATTAAAA
TATGATATTTTGAGAACGCCAACTTATGGTGAGGAAGAGATGCTTGATAGACGAGACAGTCAACTTACGGAGATTTATGA
TGATTATTATGCTCTCTTGTCGGAAGAAGAGCGTGTAGCAGTAGATACCATCCAATCAACGATTGATGCTTTTGAATCTG
AAACAGATCTCTATGGTAGAGATATTTTGGATAAATATTTGCAGAAAATACTTACTAAAGAACACTATTCCGTGAATGAC
TTGTTAATTATTCGACTATTTATTGAGCATATAAGATATAAAGAGACAGATTCGGATAGTTTCCAAATATTTTTAACATT
AGTTAAACAACTTCCTGAACATGTGACTAAAATCGCATCAAATGACCTATTTGTTTTAAGAGATGTTCTCTTAGTTATTG
TTAGCGTACTCGGATCAAAAAGATTGTATACTTATCTTCCGGGTTTATTTTCAAGTTTAGACGATATTTTGAAAATTTCT
CAAGATTTTCAAAAGAAAGCCATTCTAAGTATGCTCAAGTGGAAGTATGAGTTATTTGTGAATAAGGATAAAGAAAAGGC
AATTGCTTTATATGAAGAAGCAATTATTTTTGCTAATTTACTTGAAAATGACTTTTTGGTAGAAAAATTGAAAGAGTCTT
GGAAATTAGATAATGAGTAA

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

55.518

100

0.555
  comR Streptococcus suis 05ZYH33

55.518

100

0.555
  comR Streptococcus suis D9

50.498

100

0.508
  comR Streptococcus mutans UA159

41.914

100

0.425