Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   I6H78_RS06620 Genome accession   NZ_CP066059
Coordinates   1357071..1358222 (+) Length   383 a.a.
NCBI ID   WP_001085520.1    Uniprot ID   A0A291DB85
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1352071..1363222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS06590 (I6H78_06590) ndk 1352427..1352846 (+) 420 WP_198459177.1 nucleoside-diphosphate kinase -
  I6H78_RS06595 (I6H78_06595) comM 1352981..1353604 (+) 624 WP_096408900.1 hypothetical protein Regulator
  I6H78_RS06600 (I6H78_06600) tsaE 1353688..1354131 (+) 444 WP_198459178.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  I6H78_RS06605 (I6H78_06605) - 1354121..1354642 (+) 522 WP_198459179.1 GNAT family N-acetyltransferase -
  I6H78_RS06610 (I6H78_06610) brpA 1354647..1355687 (+) 1041 WP_000592174.1 biofilm formation/cell division transcriptional regulator BrpA -
  I6H78_RS06615 (I6H78_06615) cinA 1355760..1357016 (+) 1257 WP_198459180.1 competence/damage-inducible protein A Machinery gene
  I6H78_RS06620 (I6H78_06620) recA 1357071..1358222 (+) 1152 WP_001085520.1 recombinase RecA Machinery gene
  I6H78_RS06625 (I6H78_06625) - 1358350..1358544 (+) 195 WP_198459181.1 PspC domain-containing protein -
  I6H78_RS06630 (I6H78_06630) - 1358676..1359230 (-) 555 WP_198459182.1 GNAT family N-acetyltransferase -
  I6H78_RS06635 (I6H78_06635) - 1359340..1360710 (+) 1371 WP_198459183.1 MATE family efflux transporter -
  I6H78_RS06640 (I6H78_06640) - 1360807..1361523 (+) 717 WP_049524687.1 YebC/PmpR family DNA-binding transcriptional regulator -
  I6H78_RS06645 (I6H78_06645) - 1361573..1362277 (-) 705 WP_198459184.1 CD20-like domain-containing protein -
  I6H78_RS06650 (I6H78_06650) - 1362471..1362932 (+) 462 WP_198459185.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 41063.77 Da        Isoelectric Point: 4.9523

>NTDB_id=516982 I6H78_RS06620 WP_001085520.1 1357071..1358222(+) (recA) [Streptococcus oralis strain FDAARGOS_1021]
MAKKPTKKLDEIGKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGS
ENAKKYLADHPEIFDAIDHQVRVQYGLIEDEERTTPTSVAEDLAPNQEVTLDLGDGLEIEIED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=516982 I6H78_RS06620 WP_001085520.1 1357071..1358222(+) (recA) [Streptococcus oralis strain FDAARGOS_1021]
ATGGCGAAAAAACCAACAAAAAAATTAGATGAAATTGGGAAAAAATTTGGAGCTGACCGTGAAAAAGCATTGAACGATGC
TCTTAAATTGATTGAGAAAGACTTTGGTAAAGGCTCAATCATGCGCTTGGGTGAGCGCGCGGAGCAAAAAGTTCAAGTGA
TGAGCTCAGGCTCATTGGCTCTTGACATTGCTCTTGGTTCAGGTGGTTATCCTAAAGGACGTATCATCGAAATCTACGGA
CCAGAATCATCTGGTAAGACAACGGTTGCCCTTCACGCTGTAGCGCAAGCACAGAAAGAAGGTGGTATTGCAGCCTTTAT
CGATGCGGAACATGCTCTTGATCCAGCCTATGCTGCAGCCCTTGGTGTGAATATTGATGAGCTGCTCTTGTCACAACCTG
ACTCAGGAGAGCAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCAGTTGACCTTGTCGTTATCGACTCAGTT
GCGGCCCTTGTACCTCGTGCGGAAATTGATGGGGATATTGGAGACAGCCACGTTGGTTTGCAAGCTCGTATGATGAGCCA
GGCCATGCGTAAACTCGGAGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTG
GGGTCATGTTTGGAAATCCAGAAACAACACCTGGTGGACGTGCTCTGAAATTCTACGCTTCAGTCCGTTTGGATGTTCGT
GGAAGCACACAAATCAAGGGAACTGGTGATCAAAAAGATACCAATGTCGGTAAGGAAACCAAGATCAAGGTCGTGAAAAA
CAAGGTAGCTCCACCATTTAAGGAAGCCTTTGTTGAAATCATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTCTTGA
AGATTGCAAGTGATCTCGATATCATCCAAAAAGCGGGAGCATGGTACTCTTACAAGGGTGAAAAAATCGGACAAGGATCT
GAAAATGCTAAGAAATACTTGGCGGATCACCCAGAAATCTTTGATGCCATTGACCACCAAGTCCGTGTTCAATATGGTTT
GATTGAAGATGAAGAAAGAACAACTCCTACCTCTGTTGCAGAAGATCTAGCACCTAACCAAGAAGTAACACTTGACCTAG
GCGACGGACTCGAAATCGAAATTGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A291DB85

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

92.727

100

0.932

  recA Streptococcus mitis SK321

92.468

100

0.93

  recA Streptococcus pneumoniae D39

89.717

100

0.911

  recA Streptococcus pneumoniae R6

89.717

100

0.911

  recA Streptococcus pneumoniae TIGR4

89.717

100

0.911

  recA Streptococcus pneumoniae Rx1

89.717

100

0.911

  recA Streptococcus pyogenes NZ131

85.263

99.217

0.846

  recA Streptococcus mutans UA159

84.595

100

0.846

  recA Lactococcus lactis subsp. cremoris KW2

77.904

92.167

0.718

  recA Latilactobacillus sakei subsp. sakei 23K

67.246

90.078

0.606

  recA Bacillus subtilis subsp. subtilis str. 168

69.091

86.162

0.595

  recA Vibrio cholerae strain A1552

59.593

89.817

0.535

  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.593

89.817

0.535

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

84.334

0.53

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

85.64

0.527

  recA Neisseria gonorrhoeae strain FA1090

60.909

86.162

0.525

  recA Neisseria gonorrhoeae MS11

60.909

86.162

0.525

  recA Neisseria gonorrhoeae MS11

60.909

86.162

0.525

  recA Acinetobacter baumannii D1279779

61.656

85.117

0.525

  recA Glaesserella parasuis strain SC1401

61.92

84.334

0.522

  recA Acinetobacter baylyi ADP1

61.043

85.117

0.52

  recA Pseudomonas stutzeri DSM 10701

57.514

90.339

0.52

  recA Ralstonia pseudosolanacearum GMI1000

58.133

86.684

0.504

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.576

86.162

0.496

  recA Helicobacter pylori 26695

57.143

85.901

0.491

  recA Helicobacter pylori strain NCTC11637

57.143

85.901

0.491