Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LRC_RS04290 Genome accession   NC_015975
Coordinates   841038..842126 (+) Length   362 a.a.
NCBI ID   WP_014073289.1    Uniprot ID   G2SNA8
Organism   Ligilactobacillus ruminis ATCC 27782     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 836038..847126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRC_RS04270 (LRC_07830) ymfI 837159..837887 (+) 729 WP_014073285.1 elongation factor P 5-aminopentanone reductase -
  LRC_RS04275 (LRC_07840) - 837992..838879 (+) 888 WP_014073286.1 helix-turn-helix domain-containing protein -
  LRC_RS04280 (LRC_07850) pgsA 838948..839535 (+) 588 WP_014073287.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LRC_RS04285 (LRC_07860) cinA 839679..840917 (+) 1239 WP_014073288.1 competence/damage-inducible protein A Machinery gene
  LRC_RS04290 (LRC_07870) recA 841038..842126 (+) 1089 WP_014073289.1 recombinase RecA Machinery gene
  LRC_RS04295 (LRC_07880) rny 842459..844020 (+) 1562 Protein_818 ribonuclease Y -
  LRC_RS04300 (LRC_07890) - 844232..844468 (+) 237 WP_014073291.1 hypothetical protein -
  LRC_RS04305 (LRC_07900) - 844595..846100 (+) 1506 WP_014073292.1 anthranilate synthase component I family protein -
  LRC_RS04310 (LRC_07910) - 846084..846653 (+) 570 WP_014073293.1 anthranilate synthase component II -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39232.69 Da        Isoelectric Point: 5.9391

>NTDB_id=42298 LRC_RS04290 WP_014073289.1 841038..842126(+) (recA) [Ligilactobacillus ruminis ATCC 27782]
MSDDRKAALDNALKKIEKNFGKGSIMRMGDKADTRISTVPTGSLSLDEALGVGGFPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYAQALGVNIDELLLSQPDTGEQGLEICDALVSSGAIDIVVVDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKDGSDIIGNR
VRIKVVKNKVAPPFKTAEVDIMYGEGISKTGELIDMAVEKEIVKKSGSWFSYGEERIGQGRENAKKYMKEHPDIMEEVTK
KVRAAYGIDDKQDDEQLELKIDDDKGTKSAAKSSKKVEDSTK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=42298 LRC_RS04290 WP_014073289.1 841038..842126(+) (recA) [Ligilactobacillus ruminis ATCC 27782]
GTGAGCGACGATAGAAAAGCGGCATTAGATAATGCTCTTAAGAAAATTGAAAAAAATTTTGGCAAAGGTTCTATTATGAG
GATGGGCGATAAAGCTGATACCAGGATTTCGACCGTGCCAACTGGCTCGCTTTCGTTGGATGAAGCGTTGGGAGTCGGCG
GTTTCCCACGTGGGAGGATTGTTGAAATCTACGGTCCTGAAAGTTCTGGTAAGACAACTGTTGCATTGCATGCAGTTGCT
GAAGTTCAAAAACGAGGCGGAACTGCAGCTTACATTGATGCTGAAAATGCTCTTGATCCTGCTTATGCACAGGCATTGGG
TGTTAATATCGATGAATTATTGCTGTCGCAGCCTGACACGGGAGAACAGGGACTTGAGATTTGTGACGCATTGGTTTCAT
CCGGTGCGATTGACATAGTTGTTGTCGATTCGGTCGCTGCTTTGGTTCCACGAGCAGAAATTGAAGGCGAAATGGGCGAT
ACGCACGTGGGATTGCAAGCACGTTTGATGTCGCAAGCTTTACGAAAACTTTCCGGCACAATCAATAAAACCAAGACGAT
TGCTTTGTTCATAAACCAGATTCGTGAAAAGGTCGGCGTCATGTTTGGCAATCCTGAGACAACTCCTGGCGGTCGTGCAT
TGAAGTTTTATTCGACGGTACGTTTAGAAGTGCGCCGTGCTGAACAGATCAAAGACGGATCAGATATTATTGGGAATCGT
GTTCGTATCAAGGTTGTCAAAAATAAGGTTGCGCCTCCGTTCAAGACGGCTGAAGTTGATATCATGTATGGTGAAGGGAT
TTCCAAGACCGGTGAATTGATTGATATGGCAGTTGAAAAAGAAATCGTCAAGAAGAGCGGTTCGTGGTTCTCATATGGTG
AAGAACGCATTGGTCAAGGGCGTGAAAACGCAAAGAAATATATGAAAGAACATCCGGATATCATGGAAGAAGTTACGAAG
AAAGTCAGAGCAGCATACGGAATTGATGATAAGCAGGATGATGAGCAGCTTGAATTGAAAATTGATGATGACAAAGGGAC
AAAGTCGGCTGCTAAATCATCAAAAAAAGTTGAAGACAGTACAAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2SNA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.471

96.133

0.793
  recA Bacillus subtilis subsp. subtilis str. 168

77.982

90.331

0.704
  recA Streptococcus pneumoniae D39

68.862

92.265

0.635
  recA Streptococcus pneumoniae R6

68.862

92.265

0.635
  recA Streptococcus pneumoniae Rx1

68.862

92.265

0.635
  recA Streptococcus pneumoniae TIGR4

68.862

92.265

0.635
  recA Lactococcus lactis subsp. cremoris KW2

69.486

91.436

0.635
  recA Streptococcus mutans UA159

66.765

93.923

0.627
  recA Streptococcus pyogenes NZ131

68.58

91.436

0.627
  recA Streptococcus mitis NCTC 12261

67.964

92.265

0.627
  recA Streptococcus mitis SK321

67.665

92.265

0.624
  recA Neisseria gonorrhoeae strain FA1090

64.242

91.16

0.586
  recA Neisseria gonorrhoeae MS11

64.242

91.16

0.586
  recA Neisseria gonorrhoeae MS11

64.242

91.16

0.586
  recA Ralstonia pseudosolanacearum GMI1000

61.128

93.094

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.706

93.923

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

89.227

0.558
  recA Vibrio cholerae strain A1552

62.539

89.227

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

89.779

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

90.608

0.555
  recA Glaesserella parasuis strain SC1401

62.305

88.674

0.552
  recA Helicobacter pylori 26695

57.602

94.475

0.544
  recA Helicobacter pylori strain NCTC11637

57.602

94.475

0.544
  recA Pseudomonas stutzeri DSM 10701

60.494

89.503

0.541
  recA Acinetobacter baylyi ADP1

60.372

89.227

0.539
  recA Acinetobacter baumannii D1279779

59.752

89.227

0.533

Multiple sequence alignment