Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LRC_RS04285 Genome accession   NC_015975
Coordinates   839679..840917 (+) Length   412 a.a.
NCBI ID   WP_014073288.1    Uniprot ID   G2SNA7
Organism   Ligilactobacillus ruminis ATCC 27782     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 834679..845917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRC_RS04265 (LRC_07820) yfmH 835858..837162 (+) 1305 WP_014073284.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LRC_RS04270 (LRC_07830) ymfI 837159..837887 (+) 729 WP_014073285.1 elongation factor P 5-aminopentanone reductase -
  LRC_RS04275 (LRC_07840) - 837992..838879 (+) 888 WP_014073286.1 helix-turn-helix domain-containing protein -
  LRC_RS04280 (LRC_07850) pgsA 838948..839535 (+) 588 WP_014073287.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LRC_RS04285 (LRC_07860) cinA 839679..840917 (+) 1239 WP_014073288.1 competence/damage-inducible protein A Machinery gene
  LRC_RS04290 (LRC_07870) recA 841038..842126 (+) 1089 WP_014073289.1 recombinase RecA Machinery gene
  LRC_RS04295 (LRC_07880) rny 842459..844020 (+) 1562 Protein_818 ribonuclease Y -
  LRC_RS04300 (LRC_07890) - 844232..844468 (+) 237 WP_014073291.1 hypothetical protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45280.09 Da        Isoelectric Point: 4.6309

>NTDB_id=42297 LRC_RS04285 WP_014073288.1 839679..840917(+) (cinA) [Ligilactobacillus ruminis ATCC 27782]
MHAEVISVGTEILLGQITDTNSTFISQRLAELGIDVYFKTVVGDNEKRLLQALEIASGRSDMVILSGGLGPTKDDLTKQT
VAKFLNCGLLTDKDALESIEEYYRQNNRKMTDNNLLQAKYLEGSVSLPNESGMAVGSYYQNQNGPDFILLPGPPSEMRPM
FDKQVMHRLKENYAREHLLFSRVLRFYGIGESQLVTELDDLINGQTNPTIAPYAKVGEVTLRLTAQADSKESAKEILDET
EQVISKRVGQYLYGYGDDNSLPEVVVEKLKQKGLTVSASESLTGGSFQKAVTDIAGSSQVFPGGFVTYSASAKENLLDIP
KEIIIENGVVSEATAKWMAERTRIKMDTDFGVSFTGVAGPDTLEGNPAGTVWIGISQRDRQTAAFEYHFYGDRDAVRIRS
VLAGFGLINNEL

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=42297 LRC_RS04285 WP_014073288.1 839679..840917(+) (cinA) [Ligilactobacillus ruminis ATCC 27782]
ATGCATGCAGAAGTTATTTCGGTCGGAACGGAAATTTTGTTAGGCCAAATTACGGATACAAACTCGACGTTTATCAGCCA
ACGTTTGGCCGAACTGGGGATTGACGTTTATTTTAAAACGGTTGTCGGGGACAATGAAAAAAGATTGCTTCAAGCTTTGG
AGATTGCTTCAGGCAGGTCTGACATGGTTATTTTATCCGGTGGACTCGGGCCGACAAAAGATGACCTTACGAAGCAAACC
GTAGCCAAATTTTTAAATTGCGGACTTTTGACGGATAAGGATGCTTTAGAGTCCATTGAGGAGTATTATCGTCAAAATAA
TCGGAAAATGACCGATAACAATCTGTTGCAGGCAAAATATCTCGAGGGTTCGGTTTCGCTTCCAAATGAAAGCGGCATGG
CGGTAGGCAGCTATTATCAAAATCAAAACGGGCCTGACTTTATTTTGCTCCCTGGACCTCCAAGCGAAATGCGCCCCATG
TTTGACAAGCAAGTAATGCACAGATTGAAAGAAAACTATGCAAGAGAACATCTGCTTTTTTCACGAGTTTTGAGATTTTA
CGGTATTGGCGAATCACAATTGGTGACTGAATTGGATGACTTGATCAACGGACAAACGAATCCGACGATTGCGCCTTACG
CTAAAGTTGGCGAGGTTACGCTTCGTTTGACTGCTCAGGCAGATTCAAAAGAAAGCGCAAAAGAAATTCTTGATGAAACG
GAGCAAGTTATTTCGAAACGCGTGGGTCAATATCTTTATGGGTATGGTGATGACAACAGTCTTCCGGAGGTTGTCGTTGA
AAAACTAAAACAAAAAGGATTGACGGTTTCCGCTTCTGAAAGTTTAACTGGCGGTTCATTCCAGAAAGCAGTTACGGACA
TTGCCGGTTCTTCACAGGTTTTTCCCGGCGGATTCGTGACCTATTCTGCTTCCGCCAAGGAAAACCTGTTGGACATCCCG
AAGGAAATAATTATTGAAAACGGTGTCGTCAGCGAAGCAACCGCAAAGTGGATGGCTGAACGGACAAGAATCAAAATGGA
TACGGATTTTGGCGTTTCATTTACGGGCGTTGCCGGGCCTGATACGTTGGAGGGAAATCCCGCAGGAACTGTTTGGATCG
GGATATCGCAGCGAGACAGGCAGACTGCTGCTTTTGAATATCATTTTTATGGGGATCGAGATGCGGTTCGCATTCGCAGC
GTTTTAGCCGGATTCGGCCTGATTAACAATGAACTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2SNA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

52.257

100

0.534
  cinA Streptococcus mitis SK321

52.257

100

0.534
  cinA Streptococcus pneumoniae TIGR4

51.537

100

0.529
  cinA Streptococcus pneumoniae Rx1

51.3

100

0.527
  cinA Streptococcus pneumoniae R6

51.3

100

0.527
  cinA Streptococcus pneumoniae D39

51.064

100

0.524
  cinA Streptococcus mutans UA159

51.683

100

0.522
  cinA Bacillus subtilis subsp. subtilis str. 168

48.649

98.786

0.481
  cinA Streptococcus suis isolate S10

41.805

100

0.427

Multiple sequence alignment