Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GOM47_RS08330 Genome accession   NZ_CP046524
Coordinates   1660400..1661551 (-) Length   383 a.a.
NCBI ID   WP_235080509.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655400..1666551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS08310 (GOM47_08310) - 1656857..1657318 (-) 462 WP_235080506.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM47_RS08315 (GOM47_08315) - 1657496..1658212 (-) 717 WP_000532893.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM47_RS08320 (GOM47_08320) - 1658309..1659679 (-) 1371 WP_235080507.1 MATE family efflux transporter -
  GOM47_RS08325 (GOM47_08325) - 1659789..1660343 (+) 555 WP_235080508.1 GNAT family N-acetyltransferase -
  GOM47_RS08330 (GOM47_08330) recA 1660400..1661551 (-) 1152 WP_235080509.1 recombinase RecA Machinery gene
  GOM47_RS08335 (GOM47_08335) cinA 1661606..1662862 (-) 1257 WP_235080510.1 competence/damage-inducible protein A Machinery gene
  GOM47_RS08340 (GOM47_08340) brpA 1662942..1663976 (-) 1035 WP_235080511.1 biofilm formation/cell division transcriptional regulator BrpA -
  GOM47_RS08345 (GOM47_08345) - 1663981..1664502 (-) 522 WP_000455507.1 GNAT family N-acetyltransferase -
  GOM47_RS08350 (GOM47_08350) tsaE 1664492..1664935 (-) 444 WP_235080512.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GOM47_RS08355 (GOM47_08355) comM 1665039..1665662 (-) 624 WP_235080513.1 hypothetical protein Regulator
  GOM47_RS08360 (GOM47_08360) - 1665802..1666222 (-) 421 Protein_1605 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41064.80 Da        Isoelectric Point: 4.8925

>NTDB_id=405011 GOM47_RS08330 WP_235080509.1 1660400..1661551(-) (recA) [Streptococcus oralis strain SOT]
MAKKPTKKLDEIGKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGS
ENAKKYLADHPEVFDAIDHQVRVQYGLIEDEEGTTPTSVVEDLAPNQEVTLDLGEGLEIEIEE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=405011 GOM47_RS08330 WP_235080509.1 1660400..1661551(-) (recA) [Streptococcus oralis strain SOT]
ATGGCGAAAAAACCAACAAAAAAATTAGATGAAATTGGGAAAAAATTTGGGGCTGACCGTGAAAAAGCATTGAACGATGC
CCTGAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGCTTGGGTGAGCGCGCGGAGCAAAAAGTGCAAGTGA
TGAGTTCAGGGTCATTGGCACTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTACGGA
CCAGAGTCTTCTGGTAAGACAACGGTTGCCCTTCACGCTGTTGCGCAAGCACAGAAAGAAGGCGGTATTGCAGCCTTTAT
CGATGCGGAACATGCTCTTGACCCAGCCTATGCTGCAGCCCTTGGTGTGAACATTGACGAATTGCTCTTGTCACAACCAG
ACTCAGGTGAACAAGGTCTTGAAATTGCTGGAAAATTGATTGACTCAGGTGCAGTTGACCTTGTCGTTATCGACTCGGTT
GCGGCCCTTGTACCTCGTGCGGAAATTGATGGGGATATTGGAGATAGTCACGTTGGTTTGCAAGCTCGTATGATGAGCCA
GGCCATGCGTAAACTCGGAGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTG
GGGTTATGTTTGGAAATCCAGAAACAACACCTGGTGGACGTGCTTTGAAATTCTACGCTTCAGTCCGTTTGGATGTTCGT
GGAAGCACACAAATCAAAGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAGGAAACCAAGATCAAGGTCGTGAAAAA
CAAGGTGGCTCCACCATTTAAGGAAGCCTTTGTTGAAATCATGTACGGAGAAGGTATTTCTAAGACCGGTGAGCTCTTGA
AGATTGCAAGTGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTACTCTTACAAGGATGAAAAGATCGGTCAGGGTTCT
GAAAATGCTAAGAAATACTTGGCAGATCACCCAGAAGTCTTTGATGCCATCGACCATCAAGTCCGTGTTCAATATGGCTT
GATTGAAGATGAAGAAGGAACAACTCCTACTTCTGTCGTTGAGGATCTAGCACCTAACCAAGAAGTAACACTTGACCTAG
GCGAGGGACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

92.987

100

0.935
  recA Streptococcus mitis NCTC 12261

92.727

100

0.932
  recA Streptococcus pneumoniae Rx1

89.974

100

0.914
  recA Streptococcus pneumoniae D39

89.974

100

0.914
  recA Streptococcus pneumoniae R6

89.974

100

0.914
  recA Streptococcus pneumoniae TIGR4

89.974

100

0.914
  recA Streptococcus pyogenes NZ131

84.474

99.217

0.838
  recA Streptococcus mutans UA159

83.551

100

0.836
  recA Lactococcus lactis subsp. cremoris KW2

78.754

92.167

0.726
  recA Latilactobacillus sakei subsp. sakei 23K

68.235

88.773

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

86.162

0.59
  recA Glaesserella parasuis strain SC1401

57.182

94.517

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

84.334

0.535
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

85.64

0.527
  recA Neisseria gonorrhoeae MS11

60.303

86.162

0.52
  recA Neisseria gonorrhoeae MS11

60.303

86.162

0.52
  recA Neisseria gonorrhoeae strain FA1090

60.303

86.162

0.52
  recA Vibrio cholerae strain A1552

61.111

84.595

0.517
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.111

84.595

0.517
  recA Acinetobacter baumannii D1279779

60.736

85.117

0.517
  recA Acinetobacter baylyi ADP1

60.123

85.117

0.512
  recA Pseudomonas stutzeri DSM 10701

56.647

90.339

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.725

89.295

0.507
  recA Helicobacter pylori strain NCTC11637

57.447

85.901

0.493
  recA Helicobacter pylori 26695

57.447

85.901

0.493
  recA Ralstonia pseudosolanacearum GMI1000

59.306

82.768

0.491

Multiple sequence alignment