Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GOM47_RS08335 Genome accession   NZ_CP046524
Coordinates   1661606..1662862 (-) Length   418 a.a.
NCBI ID   WP_235080510.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1656606..1667862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS08310 (GOM47_08310) - 1656857..1657318 (-) 462 WP_235080506.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM47_RS08315 (GOM47_08315) - 1657496..1658212 (-) 717 WP_000532893.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM47_RS08320 (GOM47_08320) - 1658309..1659679 (-) 1371 WP_235080507.1 MATE family efflux transporter -
  GOM47_RS08325 (GOM47_08325) - 1659789..1660343 (+) 555 WP_235080508.1 GNAT family N-acetyltransferase -
  GOM47_RS08330 (GOM47_08330) recA 1660400..1661551 (-) 1152 WP_235080509.1 recombinase RecA Machinery gene
  GOM47_RS08335 (GOM47_08335) cinA 1661606..1662862 (-) 1257 WP_235080510.1 competence/damage-inducible protein A Machinery gene
  GOM47_RS08340 (GOM47_08340) brpA 1662942..1663976 (-) 1035 WP_235080511.1 biofilm formation/cell division transcriptional regulator BrpA -
  GOM47_RS08345 (GOM47_08345) - 1663981..1664502 (-) 522 WP_000455507.1 GNAT family N-acetyltransferase -
  GOM47_RS08350 (GOM47_08350) tsaE 1664492..1664935 (-) 444 WP_235080512.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GOM47_RS08355 (GOM47_08355) comM 1665039..1665662 (-) 624 WP_235080513.1 hypothetical protein Regulator
  GOM47_RS08360 (GOM47_08360) - 1665802..1666222 (-) 421 Protein_1605 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45093.38 Da        Isoelectric Point: 4.9142

>NTDB_id=405012 GOM47_RS08335 WP_235080510.1 1661606..1662862(-) (cinA) [Streptococcus oralis strain SOT]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLMSLLEIASSRSSLVILTGGLGPTEDDLTKQT
LAKFFGKNLVFDPQAQEKLDQFFAQRPDYARTPNNERQAQIVEGATPLPNETGLAVGGVSEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGTKLYSRVLRFFGIGESQLVTILADLIDHQTDPTLAPYAKTGEVTLRLSTKAVSQEKADQALDTLENQI
LDRQTFEGLSLRDICYGYGEESSLASVVVEELKKRKKSITAAESLTAGLFQATLADFSGVSAIFNGGFVTYSLEEKSKML
DISEQELKEHGVVSEFTAKKMAEQARLKTQSDYGVSLTGVAGPDSLEGHPAGTVFIGLAHAKGAEVIKANIAGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=405012 GOM47_RS08335 WP_235080510.1 1661606..1662862(-) (cinA) [Streptococcus oralis strain SOT]
ATGAAAGCAGAAATCATTGCTGTAGGAACGGAAATTTTAACAGGGCAGATTGTCAATACCAACGCCCAGTTTTTATCAGA
AAAGCTAGCAGAAATTGGAGTAGATGTCTACTTCCAAACAGCTGTGGGAGATAATGAAGCGCGTCTCATGTCCTTGCTAG
AGATTGCGAGTTCGCGTAGTAGTCTAGTCATTTTGACAGGGGGCTTAGGGCCAACTGAGGATGATTTAACCAAACAAACT
CTGGCAAAATTTTTTGGAAAAAACTTAGTGTTTGACCCTCAAGCGCAAGAAAAACTCGATCAATTTTTTGCTCAAAGGCC
AGACTATGCTCGGACACCGAATAATGAGCGCCAAGCCCAAATTGTAGAAGGGGCAACTCCACTGCCAAATGAGACAGGTT
TAGCAGTAGGAGGGGTGTCGGAAGTGGATGGCGTGACTTACGTGGTCCTCCCAGGACCGCCAAGTGAGTTGAAACCCATG
GTCTTAAATCAACTCTTACCTAAGTTAATGACTGGTACCAAGTTGTACTCACGAGTGCTCCGTTTCTTTGGGATTGGTGA
AAGTCAGTTGGTGACCATTTTGGCGGATTTGATTGACCATCAAACAGATCCGACCTTAGCTCCCTATGCCAAAACGGGAG
AGGTGACCTTGCGCTTGTCTACAAAAGCAGTCAGTCAAGAAAAGGCTGATCAAGCATTGGACACCTTGGAAAATCAAATC
TTAGATCGCCAGACTTTCGAGGGACTCTCTTTGCGAGACATCTGTTATGGATATGGGGAGGAGAGCAGCCTAGCAAGTGT
CGTTGTAGAAGAGCTTAAGAAGAGAAAGAAAAGCATTACTGCAGCAGAGAGCTTGACGGCAGGCCTTTTTCAAGCGACAT
TAGCAGACTTTTCAGGCGTTTCTGCCATTTTTAATGGCGGTTTTGTCACATACAGTTTAGAAGAAAAGTCCAAGATGCTG
GATATTTCCGAGCAAGAGCTGAAAGAACACGGGGTCGTTTCAGAGTTTACGGCTAAAAAAATGGCAGAGCAGGCACGGCT
CAAGACTCAGTCTGATTATGGAGTCAGTTTGACGGGTGTGGCTGGGCCAGATAGCCTAGAGGGGCATCCAGCTGGGACAG
TCTTTATTGGCTTGGCGCATGCAAAAGGGGCAGAGGTTATCAAGGCTAATATCGCAGGGCGGAGTCGAGCAGATGTACGT
CACATCGCGGTCATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

89.713

100

0.897
  cinA Streptococcus mitis NCTC 12261

88.517

100

0.885
  cinA Streptococcus pneumoniae TIGR4

88.278

100

0.883
  cinA Streptococcus pneumoniae Rx1

88.278

100

0.883
  cinA Streptococcus pneumoniae R6

88.278

100

0.883
  cinA Streptococcus pneumoniae D39

88.038

100

0.88
  cinA Streptococcus mutans UA159

70.096

100

0.701
  cinA Streptococcus suis isolate S10

54.087

99.522

0.538
  cinA Bacillus subtilis subsp. subtilis str. 168

44.976

100

0.45

Multiple sequence alignment