Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   GOM47_RS08355 Genome accession   NZ_CP046524
Coordinates   1665039..1665662 (-) Length   207 a.a.
NCBI ID   WP_235080513.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660039..1670662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS08330 (GOM47_08330) recA 1660400..1661551 (-) 1152 WP_235080509.1 recombinase RecA Machinery gene
  GOM47_RS08335 (GOM47_08335) cinA 1661606..1662862 (-) 1257 WP_235080510.1 competence/damage-inducible protein A Machinery gene
  GOM47_RS08340 (GOM47_08340) brpA 1662942..1663976 (-) 1035 WP_235080511.1 biofilm formation/cell division transcriptional regulator BrpA -
  GOM47_RS08345 (GOM47_08345) - 1663981..1664502 (-) 522 WP_000455507.1 GNAT family N-acetyltransferase -
  GOM47_RS08350 (GOM47_08350) tsaE 1664492..1664935 (-) 444 WP_235080512.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GOM47_RS08355 (GOM47_08355) comM 1665039..1665662 (-) 624 WP_235080513.1 hypothetical protein Regulator
  GOM47_RS08360 (GOM47_08360) - 1665802..1666222 (-) 421 Protein_1605 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23498.37 Da        Isoelectric Point: 9.8482

>NTDB_id=405013 GOM47_RS08355 WP_235080513.1 1665039..1665662(-) (comM) [Streptococcus oralis strain SOT]
MVKSIRILLLLALLQISLSSCLLWTGPALTLKQSSAYFLVFIVLASGLCAGMNFFYTRDQDVHSIINSQKKVKLFYSILL
VLNLVGVCLVLSETILTQTAFQQELVDLFLPSFFFLFGIDLLAFLPFEKYSRDLGTALNKKKTVVLTVLATLLFLRNPMT
VLSIVFYVGLGFIFARFLFPKSMRREFSFYGHVIRDILLVSAMCIFF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=405013 GOM47_RS08355 WP_235080513.1 1665039..1665662(-) (comM) [Streptococcus oralis strain SOT]
ATGGTGAAATCAATTCGCATCTTATTGTTGTTGGCTTTGCTCCAGATTAGTTTGAGTAGCTGCTTGCTGTGGACGGGGCC
AGCATTGACTTTAAAGCAATCTAGTGCCTATTTTCTAGTGTTTATCGTATTGGCATCAGGTCTGTGCGCAGGGATGAATT
TCTTTTATACTCGAGATCAGGATGTTCATAGCATTATAAACAGTCAGAAAAAAGTGAAACTATTTTATAGTATCTTGTTG
GTTTTAAACCTAGTAGGCGTCTGTCTGGTGTTGTCGGAGACTATTTTAACACAGACAGCTTTTCAGCAAGAGTTAGTAGA
TCTTTTCTTGCCTTCCTTCTTTTTCTTATTTGGCATTGATTTACTTGCCTTTTTACCGTTTGAAAAATACAGCCGAGATT
TGGGAACCGCTCTCAATAAGAAAAAAACAGTTGTCCTGACAGTTCTGGCAACCTTGCTGTTCTTGAGAAATCCAATGACG
GTTTTATCCATTGTTTTTTATGTTGGTTTGGGATTCATTTTTGCTCGGTTTTTGTTTCCAAAATCTATGAGAAGAGAATT
TTCTTTTTACGGGCACGTAATCCGAGATATTTTACTTGTTAGCGCCATGTGTATATTTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

58.738

99.517

0.585
  comM Streptococcus pneumoniae R6

58.738

99.517

0.585
  comM Streptococcus pneumoniae TIGR4

58.738

99.517

0.585
  comM Streptococcus mitis SK321

43.655

95.169

0.415
  comM Streptococcus mitis NCTC 12261

43.147

95.169

0.411

Multiple sequence alignment