Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GOM48_RS01170 Genome accession   NZ_CP046523
Coordinates   227227..228372 (+) Length   381 a.a.
NCBI ID   WP_235097838.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 222227..233372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01145 (GOM48_01130) comM 223123..223746 (+) 624 WP_235097832.1 hypothetical protein Regulator
  GOM48_RS01150 (GOM48_01135) tsaE 223850..224293 (+) 444 WP_061417733.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GOM48_RS01155 (GOM48_01140) - 224283..224804 (+) 522 WP_235097833.1 GNAT family N-acetyltransferase -
  GOM48_RS01160 (GOM48_01145) brpA 224809..225843 (+) 1035 WP_235097835.1 biofilm formation/cell division transcriptional regulator BrpA -
  GOM48_RS01165 (GOM48_01150) cinA 225916..227172 (+) 1257 WP_235097837.1 competence/damage-inducible protein A Machinery gene
  GOM48_RS01170 (GOM48_01155) recA 227227..228372 (+) 1146 WP_235097838.1 recombinase RecA Machinery gene
  GOM48_RS01175 (GOM48_01160) - 228429..228983 (-) 555 WP_125449796.1 GNAT family N-acetyltransferase -
  GOM48_RS01180 (GOM48_01165) - 229093..230460 (+) 1368 WP_235097840.1 MATE family efflux transporter -
  GOM48_RS01185 (GOM48_01170) - 230560..231276 (+) 717 WP_000532892.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM48_RS01190 (GOM48_01175) - 231326..232030 (-) 705 WP_235097842.1 CD20-like domain-containing protein -
  GOM48_RS01195 (GOM48_01180) - 232223..232684 (+) 462 WP_235098703.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40815.40 Da        Isoelectric Point: 4.8248

>NTDB_id=404899 GOM48_RS01170 WP_235097838.1 227227..228372(+) (recA) [Streptococcus oralis strain SOD]
MAKKPKKLDEISKKFGADREKALDDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGSE
NAKKYLADHPEIFDAIDHQVRVQYGLIEDEETSDASPVAETTSNQEVTLDLGDGLEIEIEE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=404899 GOM48_RS01170 WP_235097838.1 227227..228372(+) (recA) [Streptococcus oralis strain SOD]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAGTTTGGAGCTGATCGTGAAAAAGCCTTGGACGATGCTCT
TAAATTGATTGAGAAAGACTTCGGTAAGGGTTCAATCATGCGTTTGGGTGAGCGTGCAGAGCAAAAAGTGCAAGTGATGA
GTTCAGGGTCGTTGGCTCTTGATATTGCTCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGACCA
GAATCATCTGGTAAGACAACAGTTGCCCTTCACGCTGTCGCGCAAGCACAAAAAGAAGGTGGTATCGCAGCCTTTATCGA
TGCGGAGCATGCTCTTGATCCAGCTTATGCAGCAGCACTTGGTGTGAACATTGACGAATTACTCTTATCACAACCAGACT
CAGGGGAGCAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCAGGTGCAGTTGACCTTGTCGTTATCGACTCGGTTGCT
GCCCTTGTACCTCGTGCAGAAATTGATGGGGATATTGGAGACAGCCACGTTGGTTTGCAAGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGAGCTTCTATCAATAAGACAAAAACAATTGCTATCTTTATCAACCAATTACGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCTGAAACAACACCTGGTGGACGTGCTTTGAAATTCTACGCTTCAGTCCGTTTGGATGTTCGTGGA
AGCACACAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTCGGCAAGGAAACCAAGATCAAGGTCGTGAAAAACAA
GGTGGCTCCACCATTTAAGGAAGCCTTTGTTGAAATCATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTCTTGAAGA
TTGCAAGTGATCTCGATATCATCCAAAAAGCGGGAGCATGGTACTCTTACAAGGGTGAAAAAATCGGGCAAGGATCTGAA
AATGCTAAGAAATACTTGGCAGATCACCCAGAGATCTTTGATGCCATCGACCATCAAGTTCGTGTTCAATATGGCTTGAT
TGAAGATGAAGAAACCTCAGATGCTAGTCCAGTAGCAGAGACGACTTCTAACCAAGAAGTAACACTTGACCTAGGTGATG
GACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

93.49

100

0.942
  recA Streptococcus mitis SK321

93.229

100

0.94
  recA Streptococcus pneumoniae R6

90.722

100

0.924
  recA Streptococcus pneumoniae TIGR4

90.722

100

0.924
  recA Streptococcus pneumoniae D39

90.722

100

0.924
  recA Streptococcus pneumoniae Rx1

90.722

100

0.924
  recA Streptococcus pyogenes NZ131

86.243

99.213

0.856
  recA Streptococcus mutans UA159

84.817

100

0.85
  recA Lactococcus lactis subsp. cremoris KW2

77.841

92.388

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

69.605

86.352

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

69.394

86.614

0.601
  recA Acinetobacter baumannii D1279779

60

90.551

0.543
  recA Glaesserella parasuis strain SC1401

60.294

89.239

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

84.777

0.533
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

86.089

0.53
  recA Neisseria gonorrhoeae MS11

60.909

86.614

0.528
  recA Neisseria gonorrhoeae MS11

60.909

86.614

0.528
  recA Neisseria gonorrhoeae strain FA1090

60.909

86.614

0.528
  recA Vibrio cholerae strain A1552

61.728

85.039

0.525
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

85.039

0.525
  recA Acinetobacter baylyi ADP1

61.043

85.564

0.522
  recA Pseudomonas stutzeri DSM 10701

56

91.864

0.514
  recA Ralstonia pseudosolanacearum GMI1000

56.891

89.501

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.879

86.614

0.501
  recA Helicobacter pylori strain NCTC11637

57.143

86.352

0.493
  recA Helicobacter pylori 26695

57.143

86.352

0.493

Multiple sequence alignment