Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GOM48_RS01165 Genome accession   NZ_CP046523
Coordinates   225916..227172 (+) Length   418 a.a.
NCBI ID   WP_235097837.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 220916..232172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01145 (GOM48_01130) comM 223123..223746 (+) 624 WP_235097832.1 hypothetical protein Regulator
  GOM48_RS01150 (GOM48_01135) tsaE 223850..224293 (+) 444 WP_061417733.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GOM48_RS01155 (GOM48_01140) - 224283..224804 (+) 522 WP_235097833.1 GNAT family N-acetyltransferase -
  GOM48_RS01160 (GOM48_01145) brpA 224809..225843 (+) 1035 WP_235097835.1 biofilm formation/cell division transcriptional regulator BrpA -
  GOM48_RS01165 (GOM48_01150) cinA 225916..227172 (+) 1257 WP_235097837.1 competence/damage-inducible protein A Machinery gene
  GOM48_RS01170 (GOM48_01155) recA 227227..228372 (+) 1146 WP_235097838.1 recombinase RecA Machinery gene
  GOM48_RS01175 (GOM48_01160) - 228429..228983 (-) 555 WP_125449796.1 GNAT family N-acetyltransferase -
  GOM48_RS01180 (GOM48_01165) - 229093..230460 (+) 1368 WP_235097840.1 MATE family efflux transporter -
  GOM48_RS01185 (GOM48_01170) - 230560..231276 (+) 717 WP_000532892.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM48_RS01190 (GOM48_01175) - 231326..232030 (-) 705 WP_235097842.1 CD20-like domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45014.43 Da        Isoelectric Point: 5.1987

>NTDB_id=404898 GOM48_RS01165 WP_235097837.1 225916..227172(+) (cinA) [Streptococcus oralis strain SOD]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLKIASQRSNLVILTGGLGPTEDDLTKQT
LAKFLGKALVFDPQAQEKLDVFFAQRPDYARTPNNERQAQIVEGATPLPNETGLAVGGVSEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGTKLYSRVLRFFGIGESQLVTILADLIDHQTDPTLAPYAKTGEVTLRLSTKAVSQEKADQALDTLENQI
LDRQTFEGGSLRDICYGYGEETSLASVVVEELKKRKKSITAAESLTAGLFQATLADFSGVSAIFNGGFVTYSLEEKSKML
DISEQELKKHGVVSEFTAKKMAEQARLKTQSDYGVSLTGVAGPDSLEGHPAGTVFIGLAHAKGTEVIKANIAGRSRADVR
QIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=404898 GOM48_RS01165 WP_235097837.1 225916..227172(+) (cinA) [Streptococcus oralis strain SOD]
ATGAAAGCAGAAATCATTGCTGTAGGAACGGAAATTTTGACAGGGCAGATTGTCAATACCAATGCCCAGTTTTTATCAGA
AAAATTAGCAGAAATTGGAGTAGATGTCTACTTCCAAACAGCTGTCGGAGATAATGAAGCGCGTCTTTTGTCCTTACTTA
AGATTGCGAGTCAACGTAGTAATCTTGTGATTTTGACAGGGGGCTTAGGGCCAACAGAGGATGATTTGACCAAACAAACA
TTGGCAAAATTTTTGGGAAAAGCCTTGGTGTTTGACCCTCAAGCGCAAGAGAAACTGGATGTCTTTTTTGCTCAAAGGCC
AGACTATGCTCGGACACCTAATAACGAGAGGCAAGCCCAAATTGTAGAAGGGGCGACTCCACTGCCAAATGAGACAGGCT
TAGCGGTAGGAGGGGTATCGGAAGTAGATGGCGTGACCTACGTGGTCCTCCCAGGACCGCCAAGTGAGTTGAAACCCATG
GTCTTAAATCAACTCTTACCTAAGTTAATGACTGGTACCAAGTTATACTCACGAGTGCTCCGTTTCTTTGGAATTGGTGA
GAGTCAGTTGGTAACCATTTTGGCAGATTTGATTGACCATCAAACTGATCCGACCTTGGCACCTTATGCCAAAACGGGAG
AAGTGACCTTACGCTTGTCCACAAAAGCAGTTAGTCAAGAAAAGGCTGATCAAGCCTTGGACACCTTGGAAAATCAAATC
TTAGATCGCCAGACTTTCGAGGGGGGTTCACTGCGAGACATCTGTTATGGATATGGGGAAGAAACCAGTCTAGCAAGTGT
CGTTGTAGAAGAACTAAAGAAGAGAAAGAAAAGCATTACTGCAGCAGAGAGCTTGACGGCAGGTCTCTTTCAGGCTACTT
TAGCAGACTTTTCAGGCGTTTCTGCCATCTTTAATGGAGGGTTTGTCACTTACAGTTTAGAAGAAAAGTCTAAGATGCTG
GATATTTCCGAGCAAGAGCTTAAAAAACATGGGGTCGTTTCAGAGTTTACGGCTAAAAAGATGGCAGAGCAGGCACGACT
CAAGACTCAGTCTGACTACGGAGTCAGTTTGACGGGTGTGGCAGGACCAGATAGCCTAGAGGGGCATCCGGCTGGGACGG
TCTTTATTGGCTTGGCACATGCAAAAGGGACAGAGGTTATCAAGGCTAATATCGCAGGGCGGAGCCGAGCAGATGTTCGT
CAGATTGCGGTCATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

89.713

100

0.897
  cinA Streptococcus mitis NCTC 12261

88.756

100

0.888
  cinA Streptococcus pneumoniae TIGR4

88.756

100

0.888
  cinA Streptococcus pneumoniae Rx1

88.756

100

0.888
  cinA Streptococcus pneumoniae R6

88.756

100

0.888
  cinA Streptococcus pneumoniae D39

88.517

100

0.885
  cinA Streptococcus mutans UA159

70.813

100

0.708
  cinA Streptococcus suis isolate S10

54.567

99.522

0.543
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.455

Multiple sequence alignment