Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   GOM48_RS01145 Genome accession   NZ_CP046523
Coordinates   223123..223746 (+) Length   207 a.a.
NCBI ID   WP_235097832.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 218123..228746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS01140 (GOM48_01125) rpoC 219172..222837 (+) 3666 WP_235097830.1 DNA-directed RNA polymerase subunit beta' -
  GOM48_RS01145 (GOM48_01130) comM 223123..223746 (+) 624 WP_235097832.1 hypothetical protein Regulator
  GOM48_RS01150 (GOM48_01135) tsaE 223850..224293 (+) 444 WP_061417733.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GOM48_RS01155 (GOM48_01140) - 224283..224804 (+) 522 WP_235097833.1 GNAT family N-acetyltransferase -
  GOM48_RS01160 (GOM48_01145) brpA 224809..225843 (+) 1035 WP_235097835.1 biofilm formation/cell division transcriptional regulator BrpA -
  GOM48_RS01165 (GOM48_01150) cinA 225916..227172 (+) 1257 WP_235097837.1 competence/damage-inducible protein A Machinery gene
  GOM48_RS01170 (GOM48_01155) recA 227227..228372 (+) 1146 WP_235097838.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23600.59 Da        Isoelectric Point: 9.9911

>NTDB_id=404897 GOM48_RS01145 WP_235097832.1 223123..223746(+) (comM) [Streptococcus oralis strain SOD]
MIKSIRILLLLALIQISLSSCLLWKGAILTLKQSSAYFLVFIVLASGLCAGMNFFYTRDQDVHSIISSQKKVKLFYSILL
VLNLVGVCLVLSETILTQTAFQQELVDLFLPSFFFLFGIDLLVFLPFEKYSRDLGTTLNKKKTVILTVLATLLFLRNPMT
VLSIVFYVGLGFIFARFLFPKSMRREFSFYGHVIRDILLVSAMCIFF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=404897 GOM48_RS01145 WP_235097832.1 223123..223746(+) (comM) [Streptococcus oralis strain SOD]
ATGATAAAATCAATTCGCATCTTATTGTTGCTGGCTTTGATCCAGATTAGTCTGAGTAGCTGTTTACTGTGGAAGGGAGC
CATCTTAACCTTAAAGCAATCAAGCGCCTATTTTCTAGTGTTTATCGTATTGGCATCAGGTCTGTGCGCAGGGATGAATT
TCTTTTATACTCGAGATCAGGATGTTCATAGCATTATAAGCAGTCAGAAAAAAGTGAAACTATTTTATAGTATCTTGTTG
GTCTTAAACCTAGTAGGTGTCTGTCTGGTGTTATCGGAGACTATCTTAACACAGACAGCTTTTCAGCAAGAGTTGGTAGA
TCTTTTCTTGCCTTCCTTCTTTTTCTTGTTTGGCATTGATTTACTTGTCTTTTTACCATTTGAAAAATACAGCCGAGATT
TGGGAACCACTCTCAATAAGAAAAAAACAGTTATCCTAACAGTTCTGGCAACCTTGCTGTTCTTAAGAAATCCAATGACG
GTTTTATCTATTGTTTTTTATGTTGGTTTAGGCTTCATTTTTGCTCGGTTTTTGTTTCCAAAATCTATGAGAAGAGAATT
TTCCTTTTACGGGCATGTAATCCGAGATATTTTACTTGTCAGCGCCATGTGTATATTTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

60.194

99.517

0.599
  comM Streptococcus pneumoniae R6

60.194

99.517

0.599
  comM Streptococcus pneumoniae TIGR4

60.194

99.517

0.599
  comM Streptococcus mitis SK321

43.655

95.169

0.415
  comM Streptococcus mitis NCTC 12261

43.147

95.169

0.411

Multiple sequence alignment