Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FY406_RS02320 Genome accession   NZ_CP043405
Coordinates   494898..496046 (-) Length   382 a.a.
NCBI ID   WP_003089908.1    Uniprot ID   A0A7X9QFR8
Organism   Streptococcus ratti strain ATCC 31377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 489898..501046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS10570 - 490861..490989 (-) 129 WP_003089897.1 hypothetical protein -
  FY406_RS02285 (FY406_02285) - 491059..491364 (-) 306 WP_003089898.1 DUF1292 domain-containing protein -
  FY406_RS02290 (FY406_02290) ruvX 491454..491873 (-) 420 WP_003090938.1 Holliday junction resolvase RuvX -
  FY406_RS02295 (FY406_02295) - 491870..492139 (-) 270 WP_003089901.1 IreB family regulatory phosphoprotein -
  FY406_RS02300 (FY406_02300) brsR 492306..492740 (+) 435 WP_003089903.1 LytTR family DNA-binding domain-containing protein Regulator
  FY406_RS02305 (FY406_02305) brsM 492755..493201 (+) 447 WP_003089904.1 DUF3021 domain-containing protein Regulator
  FY406_RS02310 (FY406_02310) - 493408..493827 (-) 420 WP_003089906.1 hypothetical protein -
  FY406_RS02315 (FY406_02315) spx 494415..494813 (-) 399 WP_003089907.1 transcriptional regulator Spx -
  FY406_RS02320 (FY406_02320) recA 494898..496046 (-) 1149 WP_003089908.1 recombinase RecA Machinery gene
  FY406_RS02325 (FY406_02325) cinA 496089..497345 (-) 1257 WP_003089911.1 competence/damage-inducible protein A Machinery gene
  FY406_RS02330 (FY406_02330) - 497625..498185 (-) 561 WP_003089912.1 DNA-3-methyladenine glycosylase I -
  FY406_RS02335 (FY406_02335) ruvA 498223..498816 (-) 594 WP_003089915.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41049.48 Da        Isoelectric Point: 4.7673

>NTDB_id=383554 FY406_RS02320 WP_003089908.1 494898..496046(-) (recA) [Streptococcus ratti strain ATCC 31377]
MAKKTKKTEEITKKFGDERKKALDTALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGQLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTGELVKIASDLGIIQKAGAWYSYNGEKIGQGSE
NAKKFLADNPEIFDEIDHKVRVQYGLIEDSESVQEQVSPEENTDQSDQGLVLELDDAIELED

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=383554 FY406_RS02320 WP_003089908.1 494898..496046(-) (recA) [Streptococcus ratti strain ATCC 31377]
TTGGCAAAAAAAACAAAAAAGACAGAAGAAATTACTAAAAAATTTGGAGATGAGCGTAAAAAAGCGCTTGATACTGCTTT
AAAGAATATCGAGAAAGATTTTGGCAAGGGTGCTGTTATGCGCCTTGGCGAACGAGCTGAACAAAAAGTTCAAGTCATGA
GCTCAGGCAGCCTAGCCCTTGACATTGCCTTAGGTGCCGGTGGCTATCCTAAAGGACGTATTGTTGAAATCTACGGTCCG
GAATCATCAGGTAAAACAACGGTTGCTCTTCATGCTGTGGCACAGGCCCAAAAAGATGGCGGAATTGCTGCTTTTATTGA
CGCAGAGCATGCTTTGGATCCAGCCTATGCCGCAGCCTTGGGGGTTAATATTGATGAACTGTTGCTGTCGCAGCCGGATT
CAGGAGAGCAGGGACTGGAAATTGCCGGTCAGCTGATTGACTCAGGTGCTGTTGATTTGGTAGTTGTTGACTCAGTTGCG
GCTCTTGTACCGCGTGCAGAAATTGATGGAGACATTGGCGACAGCCATGTCGGTCTTCAGGCACGGATGATGAGTCAGGC
TATGCGTAAACTGTCTGCATCTATCAATAAGACAAAAACTATCGCAATTTTTATCAACCAGCTGCGTGAAAAAGTCGGAG
TGATGTTTGGCAATCCTGAAACAACACCTGGCGGACGTGCGCTGAAGTTTTATGCTTCTGTACGTCTGGATGTTCGTGGC
AATACTCAAATTAAGGGAACTGGCGATCAAAAAGACAGCAATATTGGAAAGGAAACCAAAATCAAAGTTGTCAAAAATAA
GGTTGCTCCGCCGTTTAAGGAAGCCTTTGTAGAAATCATGTACGGAGAAGGGATTTCTCGTACAGGCGAGTTGGTCAAGA
TTGCCAGTGATTTAGGAATCATTCAAAAGGCTGGTGCCTGGTATTCTTATAATGGTGAAAAGATTGGTCAAGGTTCAGAA
AATGCCAAGAAATTTTTGGCTGATAACCCTGAAATCTTTGATGAAATTGACCATAAAGTACGTGTTCAGTATGGTTTGAT
TGAAGACAGTGAATCTGTTCAAGAACAAGTCTCTCCAGAAGAAAATACCGATCAGTCTGATCAAGGTCTCGTTCTCGAAT
TGGATGATGCTATTGAATTGGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9QFR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

93.211

100

0.935
  recA Streptococcus pyogenes NZ131

88.482

100

0.885
  recA Streptococcus pneumoniae R6

84.238

100

0.853
  recA Streptococcus pneumoniae Rx1

84.238

100

0.853
  recA Streptococcus pneumoniae D39

84.238

100

0.853
  recA Streptococcus pneumoniae TIGR4

84.238

100

0.853
  recA Streptococcus mitis NCTC 12261

85.564

99.738

0.853
  recA Streptococcus mitis SK321

85.039

99.738

0.848
  recA Lactococcus lactis subsp. cremoris KW2

77.429

91.623

0.709
  recA Latilactobacillus sakei subsp. sakei 23K

66.854

93.194

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

86.126

0.592
  recA Glaesserella parasuis strain SC1401

59.016

95.812

0.565
  recA Neisseria gonorrhoeae MS11

60.286

91.623

0.552
  recA Neisseria gonorrhoeae MS11

60.286

91.623

0.552
  recA Neisseria gonorrhoeae strain FA1090

60.286

91.623

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.947

88.743

0.55
  recA Acinetobacter baumannii D1279779

60.172

91.361

0.55
  recA Acinetobacter baylyi ADP1

62.997

85.602

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

84.555

0.534
  recA Vibrio cholerae strain A1552

62.154

85.079

0.529
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.154

85.079

0.529
  recA Pseudomonas stutzeri DSM 10701

59.633

85.602

0.51
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.649

0.508
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.984

0.503
  recA Helicobacter pylori 26695

57.273

86.387

0.495
  recA Helicobacter pylori strain NCTC11637

57.273

86.387

0.495

Multiple sequence alignment