Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HYN24_RS15475 Genome accession   NZ_CP031842
Coordinates   3206950..3207978 (-) Length   342 a.a.
NCBI ID   WP_117610097.1    Uniprot ID   A0A3B7AAB9
Organism   Dechloromonas sp. HYN0024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3201950..3212978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN24_RS15440 (HYN24_15440) - 3202201..3202458 (-) 258 WP_117610091.1 PsiF family protein -
  HYN24_RS15445 (HYN24_15445) hprK 3202505..3203440 (-) 936 WP_117610092.1 HPr(Ser) kinase/phosphatase -
  HYN24_RS15450 (HYN24_15450) ptsN 3203444..3203896 (-) 453 WP_117610093.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HYN24_RS15455 (HYN24_15455) hpf 3203953..3204279 (-) 327 WP_117610094.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HYN24_RS15460 (HYN24_15460) rpoN/rpoN1 3204295..3205767 (-) 1473 WP_117610095.1 RNA polymerase factor sigma-54 Machinery gene
  HYN24_RS15465 (HYN24_15465) lptB 3205795..3206529 (-) 735 WP_205421405.1 LPS export ABC transporter ATP-binding protein -
  HYN24_RS15470 (HYN24_15470) recX 3206526..3206957 (-) 432 WP_117610096.1 recombination regulator RecX -
  HYN24_RS15475 (HYN24_15475) recA 3206950..3207978 (-) 1029 WP_117610097.1 recombinase RecA Machinery gene
  HYN24_RS16235 - 3208181..3208417 (+) 237 WP_162888761.1 hypothetical protein -
  HYN24_RS15480 (HYN24_15480) - 3208411..3209067 (+) 657 WP_117610418.1 RluA family pseudouridine synthase -
  HYN24_RS15485 (HYN24_15485) - 3209139..3210686 (+) 1548 WP_117610098.1 sodium:solute symporter family protein -
  HYN24_RS15490 (HYN24_15490) - 3210772..3211830 (+) 1059 WP_117610099.1 VanZ family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36534.17 Da        Isoelectric Point: 6.5159

>NTDB_id=311781 HYN24_RS15475 WP_117610097.1 3206950..3207978(-) (recA) [Dechloromonas sp. HYN0024]
MDDNKAKALAAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVV
AEMQKLGGVAAFIDAEHALDPQYAQKLGVSVGDLLISQPDTGEQALEIADMLVRSGSVDIIVIDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGS
ETKVKVVKNKVAPPFREAIFDILYGEGISRQGEVVEMGVAHKLVEKSGAWYSYKGEKIGQGKDNSREFLKSHPEIAQEIE
AKIREAASTTVIKPTKAAAADA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=311781 HYN24_RS15475 WP_117610097.1 3206950..3207978(-) (recA) [Dechloromonas sp. HYN0024]
ATGGACGACAACAAGGCAAAGGCGCTCGCCGCAGCGCTGCAACAGATCGAAAAGCAATTCGGCAAAGGCTCCATCATGAA
GATGGGCGATGCCGAAATCGACGAAGGCATTCAGGTGGTGTCTACCGGCTCGCTCGGTCTGGACATTGCTCTTGGTGTCG
GTGGTCTGCCGCGTGGCCGTGTCGTCGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACGCTGTGCCTGCAGGTCGTT
GCCGAAATGCAGAAACTCGGTGGCGTCGCCGCCTTCATCGACGCCGAACACGCGCTCGATCCGCAATATGCCCAGAAGCT
CGGCGTCAGTGTCGGCGATCTGCTCATCTCGCAGCCCGACACCGGCGAACAGGCGCTTGAGATCGCCGATATGCTGGTTC
GCTCCGGCTCTGTGGACATCATTGTCATCGACTCGGTGGCTGCCCTTACGCCGCGTGCCGAAATCGAAGGCGAAATGGGC
GACCAGATGGTTGGTCTGCATGCCCGCCTGATGAGCCAGGCTCTGCGCAAGCTGACCGCCAACATCAAGAAGACGAATAC
CCTGGTCATCTTCATCAACCAGATCCGAATGAAGATCGGTGTCATGTTCGGCTCGCCGGAAACCACTACCGGCGGCAATG
CGCTCAAGTTTTACGCGTCTGTCCGTCTTGATATCCGCCGTATCGGCGCGATCAAGAAGGGCGATGAAGTGATCGGCAGC
GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCCCCACCCTTCCGTGAAGCCATTTTCGACATCCTTTACGGAGAAGG
CATTTCGCGTCAGGGTGAAGTCGTCGAAATGGGCGTTGCCCACAAGTTGGTCGAGAAGTCGGGTGCTTGGTATTCCTACA
AGGGCGAAAAAATCGGCCAGGGCAAGGACAATTCCCGCGAATTCCTGAAATCGCACCCGGAAATCGCCCAGGAAATCGAA
GCGAAGATTCGTGAGGCGGCCAGTACCACCGTCATCAAGCCGACCAAGGCTGCTGCCGCTGATGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7AAB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.857

92.105

0.763
  recA Pseudomonas stutzeri DSM 10701

71.387

100

0.722
  recA Neisseria gonorrhoeae MS11

74.691

94.737

0.708
  recA Neisseria gonorrhoeae MS11

74.691

94.737

0.708
  recA Neisseria gonorrhoeae strain FA1090

74.691

94.737

0.708
  recA Acinetobacter baylyi ADP1

71.217

98.538

0.702
  recA Glaesserella parasuis strain SC1401

69.501

99.708

0.693
  recA Acinetobacter baumannii D1279779

70.606

96.491

0.681
  recA Vibrio cholerae strain A1552

66.957

100

0.675
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.957

100

0.675
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.957

96.199

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

95.614

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

95.029

0.617
  recA Helicobacter pylori strain NCTC11637

63.303

95.614

0.605
  recA Helicobacter pylori 26695

62.997

95.614

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

63.58

94.737

0.602
  recA Streptococcus pneumoniae R6

62.346

94.737

0.591
  recA Streptococcus pneumoniae Rx1

62.346

94.737

0.591
  recA Streptococcus pneumoniae D39

62.346

94.737

0.591
  recA Streptococcus pneumoniae TIGR4

62.346

94.737

0.591
  recA Streptococcus mutans UA159

61.963

95.322

0.591
  recA Streptococcus mitis NCTC 12261

61.728

94.737

0.585
  recA Streptococcus mitis SK321

61.42

94.737

0.582
  recA Streptococcus pyogenes NZ131

61.043

95.322

0.582
  recA Lactococcus lactis subsp. cremoris KW2

61.111

94.737

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

94.444

0.57

Multiple sequence alignment