Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HYN24_RS15460 Genome accession   NZ_CP031842
Coordinates   3204295..3205767 (-) Length   490 a.a.
NCBI ID   WP_117610095.1    Uniprot ID   A0A3B7A8U0
Organism   Dechloromonas sp. HYN0024     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3199295..3210767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN24_RS15430 (HYN24_15430) ttcA 3200305..3201168 (+) 864 WP_117610089.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  HYN24_RS15435 (HYN24_15435) - 3201240..3202136 (+) 897 WP_162888760.1 adenylate/guanylate cyclase domain-containing protein -
  HYN24_RS15440 (HYN24_15440) - 3202201..3202458 (-) 258 WP_117610091.1 PsiF family protein -
  HYN24_RS15445 (HYN24_15445) hprK 3202505..3203440 (-) 936 WP_117610092.1 HPr(Ser) kinase/phosphatase -
  HYN24_RS15450 (HYN24_15450) ptsN 3203444..3203896 (-) 453 WP_117610093.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HYN24_RS15455 (HYN24_15455) hpf 3203953..3204279 (-) 327 WP_117610094.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HYN24_RS15460 (HYN24_15460) rpoN/rpoN1 3204295..3205767 (-) 1473 WP_117610095.1 RNA polymerase factor sigma-54 Machinery gene
  HYN24_RS15465 (HYN24_15465) lptB 3205795..3206529 (-) 735 WP_205421405.1 LPS export ABC transporter ATP-binding protein -
  HYN24_RS15470 (HYN24_15470) recX 3206526..3206957 (-) 432 WP_117610096.1 recombination regulator RecX -
  HYN24_RS15475 (HYN24_15475) recA 3206950..3207978 (-) 1029 WP_117610097.1 recombinase RecA Machinery gene
  HYN24_RS16235 - 3208181..3208417 (+) 237 WP_162888761.1 hypothetical protein -
  HYN24_RS15480 (HYN24_15480) - 3208411..3209067 (+) 657 WP_117610418.1 RluA family pseudouridine synthase -
  HYN24_RS15485 (HYN24_15485) - 3209139..3210686 (+) 1548 WP_117610098.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 55400.46 Da        Isoelectric Point: 5.0641

>NTDB_id=311780 HYN24_RS15460 WP_117610095.1 3204295..3205767(-) (rpoN/rpoN1) [Dechloromonas sp. HYN0024]
MKPALQLKLSQHLALTPQLQQSIKLLQLSTIEMQQEIERYLLENPMLEREDEQGAETFSSAQQFDSPQTSEGEREQKAER
EERDARDDREQDVPSAPSDVDDDRWASDAGTFTGAGRDDDDDNDSQDIHGTTISLRDHLGWQLGMTQVSERDRSLVRFLI
EALDDDGYLSASLEELWETLPPEYEIEIEELEIALHHIQNFDPVGIGARNLQECLALQLKALPGGDATRDLALTIVQKHL
ELLAARDFAKIRRLTGCDDESLKAAQSVITSLNPRPAARFSQIEARYITPDVIVKKLKGKWTAYINPDAYPRLRINRLYA
EILSKQRRGNGNLSTQLQEARWLIKNVQQRFETIHRVTQAIVDRQRQFFEHGEVAMRPLVLREIADILGLHESTVSRVTS
QKYMATPRGIFELKYFFGSHVATDTGGACSATAIRALIKQLISAEDGKKPLSDSQLSEILGQQGIVVARRTVAKYRESLN
IPPVNLRKTL

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=311780 HYN24_RS15460 WP_117610095.1 3204295..3205767(-) (rpoN/rpoN1) [Dechloromonas sp. HYN0024]
ATGAAGCCGGCACTCCAGCTAAAACTCTCCCAACACCTGGCGCTTACTCCTCAGTTGCAGCAGTCGATCAAGCTGTTGCA
GCTGTCGACAATCGAAATGCAGCAGGAAATCGAGCGTTACCTGCTCGAAAATCCCATGCTTGAGCGCGAGGACGAACAGG
GGGCCGAGACTTTTTCCAGTGCCCAGCAGTTCGATTCGCCGCAAACCAGCGAAGGCGAGCGCGAGCAAAAGGCCGAGCGC
GAAGAGCGTGATGCCCGCGACGACCGCGAGCAGGATGTTCCGTCTGCACCCTCCGATGTCGATGACGACCGCTGGGCTTC
CGATGCTGGTACCTTCACCGGGGCCGGACGGGACGACGACGATGACAACGATTCGCAGGACATCCACGGGACGACGATTA
GCCTGCGCGACCATCTTGGCTGGCAGTTGGGGATGACCCAGGTGTCCGAGCGTGACCGTAGCCTGGTGCGCTTCCTGATC
GAAGCGCTTGATGATGATGGCTATCTGTCGGCTTCGCTGGAAGAACTCTGGGAAACCTTGCCGCCGGAATACGAAATTGA
AATCGAAGAGCTGGAAATTGCGCTGCATCACATCCAGAACTTCGACCCGGTCGGCATCGGTGCGCGCAATCTGCAGGAAT
GTCTGGCCCTGCAACTCAAGGCCCTGCCTGGCGGCGATGCCACCCGCGATCTGGCCCTGACCATTGTTCAGAAACATCTC
GAACTTCTGGCCGCCCGCGATTTTGCCAAGATTCGCCGGCTGACCGGTTGCGACGACGAGTCGCTGAAGGCTGCGCAGAG
CGTCATTACCAGCCTGAATCCACGCCCGGCAGCCCGTTTTTCACAGATCGAGGCCCGCTATATCACGCCCGATGTTATCG
TGAAGAAGCTCAAGGGCAAGTGGACCGCCTACATTAATCCGGATGCTTATCCGCGTCTGCGCATCAATCGTCTCTACGCG
GAAATTCTGTCCAAGCAGCGGCGCGGCAACGGCAATCTGTCGACTCAGTTGCAGGAAGCCCGCTGGCTGATCAAAAACGT
TCAGCAACGGTTCGAAACCATACACCGCGTGACACAAGCCATCGTTGATCGCCAACGGCAGTTTTTCGAGCATGGGGAAG
TGGCGATGCGGCCGCTGGTCCTGCGCGAAATTGCCGATATTCTCGGTTTGCATGAATCGACGGTATCGCGTGTCACCAGC
CAGAAATACATGGCGACGCCGCGTGGTATCTTCGAATTGAAATACTTCTTCGGCAGCCATGTCGCCACTGATACTGGCGG
TGCGTGTTCTGCTACGGCCATCCGGGCACTGATCAAGCAGTTGATCTCGGCTGAGGATGGCAAGAAGCCCTTGTCGGATA
GTCAATTATCCGAAATACTAGGCCAGCAGGGAATCGTAGTTGCCCGACGGACGGTCGCCAAATACCGCGAGTCGCTCAAC
ATTCCCCCGGTCAATTTACGCAAGACCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(333-488)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(128-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7A8U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.467

100

0.569

Multiple sequence alignment