Detailed information NTG0303304

Bioinformatically predicted

Overview

• Name: comEA
• Type: Machinery gene
• Locus tag: soil367_RS11215
• Genome accession: NZ_CP031093
• Coordinates: 2528198..2528434 (-)
• Length: 78 a.a.
• NCBI ID: WP_342777436.1
• Uniprot ID: -
• Organism: Hydrocarboniclastica marina strain soil36-7
• Function: dsDNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2523198..2533434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
soil367_RS11195 (soil367_11285)	rfbA	2523840..2524721 (-)	882	WP_136549192.1	glucose-1-phosphate thymidylyltransferase RfbA	-
soil367_RS11200 (soil367_11290)	rfbB	2524718..2525782 (-)	1065	WP_136549193.1	dTDP-glucose 4,6-dehydratase	-
soil367_RS11205 (soil367_11295)	-	2525941..2526873 (-)	933	WP_136549194.1	Wzz/FepE/Etk N-terminal domain-containing protein	-
soil367_RS11210 (soil367_11300)	cysQ	2527074..2527844 (-)	771	WP_136549195.1	3'(2'),5'-bisphosphate nucleotidase CysQ	-
soil367_RS11215 (soil367_11305)	comEA	2528198..2528434 (-)	237	WP_342777436.1	ComEA family DNA-binding protein	Machinery gene
soil367_RS11220 (soil367_11310)	-	2529036..2529578 (-)	543	WP_136549197.1	transposase	-
soil367_RS11225 (soil367_11315)	-	2529882..2530268 (-)	387	WP_136549198.1	helix-turn-helix transcriptional regulator	-
soil367_RS11230 (soil367_11320)	-	2530360..2530551 (-)	192	WP_136549199.1	hypothetical protein	-
soil367_RS11235 (soil367_11325)	-	2530548..2531039 (-)	492	WP_246065260.1	zeta toxin family protein	-
soil367_RS11240 (soil367_11330)	-	2531527..2532555 (+)	1029	WP_136549200.1	integrase arm-type DNA-binding domain-containing protein	-
soil367_RS11245 (soil367_11335)	-	2532623..2532991 (+)	369	WP_136549201.1	transposase	-
soil367_RS11250 (soil367_11340)	tnpB	2532988..2533323 (+)	336	WP_136549202.1	IS66 family insertion sequence element accessory protein TnpB	-

Sequence

Protein

• Length: 78 a.a.
• Molecular weight: 8147.20 Da
• Isoelectric Point: 4.3189

>NTDB_id=303304 soil367_RS11215 WP_342777436.1 2528198..2528434(-) (comEA) [Hydrocarboniclastica marina strain soil36-7]
MVSGLALAEEPATWSVNLNTATVEVLAESLEGIGASKAQAIVDYREANGSFKAVDDLANVKGIGASTIEKNRKTIVLE

Nucleotide

• Length: 237 bp

>NTDB_id=303304 soil367_RS11215 WP_342777436.1 2528198..2528434(-) (comEA) [Hydrocarboniclastica marina strain soil36-7]
ATGGTCAGTGGTCTCGCCCTCGCGGAAGAACCCGCCACCTGGAGCGTTAACCTCAACACAGCTACTGTCGAAGTGCTCGC
AGAGTCGCTTGAAGGCATTGGCGCCAGCAAAGCCCAGGCCATCGTTGACTACCGCGAAGCCAACGGTTCTTTTAAGGCCG
TTGACGACCTCGCTAACGTCAAAGGCATCGGCGCCTCAACGATCGAGAAGAATCGCAAAACTATCGTTTTGGAATAG

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (16-75)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEA	Vibrio cholerae strain A1552	58.333	92.308	0.538
comEA	Vibrio cholerae C6706	58.333	92.308	0.538
comEA/comE1	Glaesserella parasuis strain SC1401	58.73	80.769	0.474
comEA	Vibrio parahaemolyticus RIMD 2210633	57.143	80.769	0.462
comE1/comEA	Haemophilus influenzae Rd KW20	50.725	88.462	0.449
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.308	83.333	0.436
comEA	Acinetobacter baumannii D1279779	50	84.615	0.423
comEA/celA/cilE	Streptococcus mitis NCTC 12261	50.794	80.769	0.41
comEA	Vibrio campbellii strain DS40M4	50.794	80.769	0.41
comEA	Acinetobacter baumannii strain A118	48.485	84.615	0.41
comEA	Acinetobacter baylyi ADP1	51.613	79.487	0.41
comA	Synechocystis sp. PCC 6803	44.928	88.462	0.397
comEA/celA/cilE	Streptococcus mitis SK321	49.206	80.769	0.397
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	49.206	80.769	0.397
comEA/celA/cilE	Streptococcus pneumoniae Rx1	49.206	80.769	0.397
comEA/celA/cilE	Streptococcus pneumoniae D39	49.206	80.769	0.397
comEA/celA/cilE	Streptococcus pneumoniae R6	49.206	80.769	0.397
comEA	Streptococcus thermophilus LMD-9	48.387	79.487	0.385
comE	Neisseria gonorrhoeae MS11	53.571	71.795	0.385
comE	Neisseria gonorrhoeae MS11	53.571	71.795	0.385
comE	Neisseria gonorrhoeae MS11	53.571	71.795	0.385
comE	Neisseria gonorrhoeae MS11	53.571	71.795	0.385
comEA	Bacillus subtilis subsp. subtilis str. 168	46.032	80.769	0.372
comEA	Staphylococcus aureus MW2	52.727	70.513	0.372
comEA	Staphylococcus aureus N315	52.727	70.513	0.372
comEA	Legionella pneumophila str. Paris	48.333	76.923	0.372
comEA	Legionella pneumophila strain ERS1305867	48.333	76.923	0.372