Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EGC57_RS07180 Genome accession   NZ_CP033621
Coordinates   1394940..1395974 (-) Length   344 a.a.
NCBI ID   WP_023610531.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M75     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1389940..1400974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGC57_RS07145 (EGC57_07155) - 1390716..1391018 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  EGC57_RS07150 (EGC57_07160) - 1391011..1391307 (-) 297 WP_002983486.1 YlxR family protein -
  EGC57_RS07155 (EGC57_07165) nusA 1391323..1392480 (-) 1158 WP_002988817.1 transcription termination factor NusA -
  EGC57_RS07160 (EGC57_07170) rimP 1392655..1393191 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  EGC57_RS07170 (EGC57_07180) trmB 1393450..1394085 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EGC57_RS07175 (EGC57_07185) - 1394085..1394876 (-) 792 WP_002983385.1 phosphotransferase family protein -
  EGC57_RS07180 (EGC57_07190) pptB 1394940..1395974 (-) 1035 WP_023610531.1 ABC transporter permease Regulator
  EGC57_RS07185 (EGC57_07195) pptA 1395977..1396702 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  EGC57_RS07190 (EGC57_07200) - 1396774..1397193 (+) 420 WP_011285081.1 HIT family protein -
  EGC57_RS07195 (EGC57_07205) - 1397190..1397546 (+) 357 WP_020905404.1 hypothetical protein -
  EGC57_RS07200 (EGC57_07210) - 1397657..1398931 (-) 1275 WP_020837594.1 LCP family protein -
  EGC57_RS07205 (EGC57_07215) - 1398940..1399464 (-) 525 WP_030126880.1 N-acetyltransferase -
  EGC57_RS07210 (EGC57_07220) tsaE 1399439..1399900 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40256.48 Da        Isoelectric Point: 10.3713

>NTDB_id=283967 EGC57_RS07180 WP_023610531.1 1394940..1395974(-) (pptB) [Streptococcus pyogenes strain M75]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAILLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=283967 EGC57_RS07180 WP_023610531.1 1394940..1395974(-) (pptB) [Streptococcus pyogenes strain M75]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTTTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTATATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.314

100

0.433

  pptB Streptococcus salivarius strain HSISS4

43.023

100

0.43


Multiple sequence alignment