Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CHF41_RS00450 Genome accession   NZ_CP022680
Coordinates   98943..100088 (+) Length   381 a.a.
NCBI ID   WP_119875511.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 93943..105088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS00420 ruvA 94740..95330 (+) 591 WP_119875506.1 Holliday junction branch migration protein RuvA -
  CHF41_RS00425 - 95342..95908 (+) 567 WP_119875507.1 DNA-3-methyladenine glycosylase I -
  CHF41_RS00430 - 95901..96488 (+) 588 WP_240622959.1 GNAT family N-acetyltransferase -
  CHF41_RS00435 - 96575..96970 (+) 396 WP_119875508.1 helix-turn-helix transcriptional regulator -
  CHF41_RS00440 - 96949..97620 (+) 672 WP_119875509.1 CPBP family intramembrane glutamic endopeptidase -
  CHF41_RS00445 cinA 97706..98908 (+) 1203 WP_119875510.1 competence/damage-inducible protein A Machinery gene
  CHF41_RS00450 recA 98943..100088 (+) 1146 WP_119875511.1 recombinase RecA Machinery gene
  CHF41_RS00455 spx 100278..100676 (+) 399 WP_075105162.1 transcriptional regulator Spx -
  CHF41_RS00460 - 100855..101121 (+) 267 WP_075099514.1 IreB family regulatory phosphoprotein -
  CHF41_RS00465 ruvX 101121..101540 (+) 420 WP_119875512.1 Holliday junction resolvase RuvX -
  CHF41_RS00470 - 101551..101868 (+) 318 WP_075105164.1 DUF1292 domain-containing protein -
  CHF41_RS00475 - 102027..103283 (-) 1257 WP_119875513.1 ISL3 family transposase -
  CHF41_RS00480 comR 103571..104500 (+) 930 WP_119875514.1 helix-turn-helix domain-containing protein Regulator

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40931.67 Da        Isoelectric Point: 5.0447

>NTDB_id=241539 CHF41_RS00450 WP_119875511.1 98943..100088(+) (recA) [Streptococcus respiraculi strain HTS25]
MAKKPSKKLEDITKKFGEERKKALDDALKTIEKDFGKGAIMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGSGDQKDTNVGKETKVKIVKNKVAPPFKEAVVEIMYGHGISQTGELIEIGSNLGIIKKAGAWYSYNDEKIGQGS
ENAKKYLEENPEVFAEIDRKIRVHYGLIEDTEPAAVAEKTEVPADIQDVVLDLDGGIELED

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=241539 CHF41_RS00450 WP_119875511.1 98943..100088(+) (recA) [Streptococcus respiraculi strain HTS25]
TTGGCGAAAAAACCAAGTAAAAAATTAGAAGATATTACCAAAAAATTTGGTGAGGAACGCAAAAAGGCCTTAGATGACGC
TCTAAAAACGATTGAAAAAGATTTTGGTAAAGGGGCGATTATGCGCCTTGGAGAGCGTGCTGAACAAAAGGTTCAAGTTA
TGAGTTCAGGAAGCTTGTCGATTGATATTGCCTTAGGTGCTGGTGGTTATCCGAAAGGACGGATTATCGAAATCTACGGA
CCTGAAAGTTCAGGTAAGACGACAGTGGCTCTTCATGCGGTTGCCCAAGCACAAAAAGAAGGTGGTATTGCAGCCTTTAT
CGATGCTGAGCATGCACTTGACCCGGCCTATGCCCAAGCGCTTGGTGTGAATATTGATGAGTTGCTCTTGTCTCAACCAG
ACTCTGGTGAGCAGGGACTCGAAATTGCTGGTAAGTTGATTGATTCAGGTGCAGTTGACCTTGTAGTTGTTGACTCGGTT
GCAGCCCTTGTGCCTCGTGCGGAGATTGATGGTGAGATTGGGGATAGCCACGTTGGTTTGCAGGCACGTATGATGAGCCA
GGCTATGCGTAAGCTGTCTGCTTCCATTAACAAGACCAAAACGATTGCGATTTTCATCAACCAATTGCGTGAAAAAGTTG
GTGTGATGTTTGGAAATCCTGAGACAACGCCTGGTGGGCGTGCGCTTAAATTCTACGCTTCTGTCCGTATGGATGTTCGT
GGAAATACTCAGATTAAGGGGAGTGGTGACCAAAAAGATACCAATGTCGGAAAAGAAACCAAGGTGAAAATTGTTAAAAA
TAAGGTCGCTCCTCCTTTCAAGGAAGCCGTTGTTGAAATCATGTACGGCCACGGTATTTCACAAACGGGTGAATTGATTG
AAATCGGTAGCAATCTTGGTATCATCAAAAAAGCTGGTGCTTGGTATTCTTACAACGATGAGAAAATCGGTCAAGGTTCA
GAAAACGCTAAGAAATACTTGGAAGAGAATCCAGAAGTATTTGCTGAAATCGATCGCAAAATCCGTGTTCACTATGGCTT
GATTGAAGATACAGAGCCTGCAGCAGTTGCTGAAAAGACAGAAGTTCCAGCAGACATTCAAGATGTTGTTCTTGATTTGG
ACGGCGGGATTGAATTAGAAGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

84.856

100

0.853
  recA Streptococcus pneumoniae TIGR4

83.204

100

0.845
  recA Streptococcus pneumoniae Rx1

83.204

100

0.845
  recA Streptococcus pneumoniae D39

83.204

100

0.845
  recA Streptococcus pneumoniae R6

83.204

100

0.845
  recA Streptococcus mutans UA159

83.636

100

0.845
  recA Streptococcus mitis NCTC 12261

83.77

100

0.84
  recA Streptococcus pyogenes NZ131

83.508

100

0.837
  recA Lactococcus lactis subsp. cremoris KW2

76.62

93.176

0.714
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

86.352

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

67.576

86.614

0.585
  recA Acinetobacter baumannii D1279779

60.405

90.814

0.549
  recA Acinetobacter baylyi ADP1

58.739

91.601

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.117

89.501

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.769

85.302

0.535
  recA Vibrio cholerae strain A1552

62.769

85.302

0.535
  recA Glaesserella parasuis strain SC1401

59.412

89.239

0.53
  recA Neisseria gonorrhoeae MS11

61.027

86.877

0.53
  recA Neisseria gonorrhoeae MS11

61.027

86.877

0.53
  recA Neisseria gonorrhoeae strain FA1090

61.027

86.877

0.53
  recA Pseudomonas stutzeri DSM 10701

58.772

89.764

0.528
  recA Ralstonia pseudosolanacearum GMI1000

59.104

87.927

0.52
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.574

86.352

0.514
  recA Helicobacter pylori 26695

56.973

88.451

0.504
  recA Helicobacter pylori strain NCTC11637

56.973

88.451

0.504
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

86.877

0.501

Multiple sequence alignment