Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CHF41_RS00445 Genome accession   NZ_CP022680
Coordinates   97706..98908 (+) Length   400 a.a.
NCBI ID   WP_119875510.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 92706..103908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS00415 - 93513..94733 (+) 1221 WP_119875505.1 MFS transporter -
  CHF41_RS00420 ruvA 94740..95330 (+) 591 WP_119875506.1 Holliday junction branch migration protein RuvA -
  CHF41_RS00425 - 95342..95908 (+) 567 WP_119875507.1 DNA-3-methyladenine glycosylase I -
  CHF41_RS00430 - 95901..96488 (+) 588 WP_240622959.1 GNAT family N-acetyltransferase -
  CHF41_RS00435 - 96575..96970 (+) 396 WP_119875508.1 helix-turn-helix transcriptional regulator -
  CHF41_RS00440 - 96949..97620 (+) 672 WP_119875509.1 CPBP family intramembrane glutamic endopeptidase -
  CHF41_RS00445 cinA 97706..98908 (+) 1203 WP_119875510.1 competence/damage-inducible protein A Machinery gene
  CHF41_RS00450 recA 98943..100088 (+) 1146 WP_119875511.1 recombinase RecA Machinery gene
  CHF41_RS00455 spx 100278..100676 (+) 399 WP_075105162.1 transcriptional regulator Spx -
  CHF41_RS00460 - 100855..101121 (+) 267 WP_075099514.1 IreB family regulatory phosphoprotein -
  CHF41_RS00465 ruvX 101121..101540 (+) 420 WP_119875512.1 Holliday junction resolvase RuvX -
  CHF41_RS00470 - 101551..101868 (+) 318 WP_075105164.1 DUF1292 domain-containing protein -
  CHF41_RS00475 - 102027..103283 (-) 1257 WP_119875513.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 43770.20 Da        Isoelectric Point: 5.1772

>NTDB_id=241538 CHF41_RS00445 WP_119875510.1 97706..98908(+) (cinA) [Streptococcus respiraculi strain HTS25]
MKAELIAVGTEILTGQIVNTNAQFLSEKLATLGIDVFFHTAVGDNEARLLSVLDIARKRSDLVLLCGGLGPTEDDLTKQT
LAKFLGKELVFDQAALEKLDRFFASRKGRVRTPNNERQAQLISGSIPLHNPAGLAVGGLIEHSGVTYIVLPGPPSELKAM
FTESLHPLLLHSGERLYSRVLRFFGIGESQLVTDLADLIDAQTDPTLAPYAKTGEVTLRLSTKAEDEAKANQKLDQLEKE
ILSRKQLANYLYGYGEDNSLAKIVTRELEGQGIRFAIVENNTAGMLQVDLTLSLQNRQLFKGGRVMTDEGVSAETAEQFA
RSICKELDADVGLVLLGGIKPESQVDNVMASYFIALSFNDQVTVTEVDLGGYTELHIRQIACLHALNAMRNILLNHKILL

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=241538 CHF41_RS00445 WP_119875510.1 97706..98908(+) (cinA) [Streptococcus respiraculi strain HTS25]
ATGAAGGCAGAATTGATTGCAGTTGGGACTGAGATTCTGACAGGTCAGATTGTGAACACCAATGCTCAATTTTTATCAGA
AAAACTTGCAACCTTGGGCATCGATGTCTTTTTTCATACAGCAGTTGGTGACAATGAAGCGCGTCTCTTATCTGTATTAG
ATATTGCACGTAAGCGCAGTGATTTAGTTCTTCTCTGTGGTGGGTTGGGGCCGACCGAAGATGATCTGACCAAGCAAACT
CTAGCCAAGTTTTTAGGTAAGGAACTGGTCTTTGACCAAGCAGCCTTGGAGAAATTAGACCGCTTTTTTGCAAGTAGAAA
AGGGCGTGTTCGTACGCCAAATAATGAGCGTCAAGCCCAGCTTATCTCAGGTAGCATACCGCTTCACAATCCAGCAGGTC
TAGCAGTTGGTGGCTTGATTGAGCATTCTGGCGTGACCTATATCGTGCTACCTGGTCCACCGAGTGAATTAAAGGCCATG
TTTACAGAAAGTTTACATCCCTTGTTGCTTCATTCAGGTGAGAGATTATACTCTCGCGTTCTTCGATTCTTTGGCATTGG
TGAAAGTCAACTGGTGACGGATTTGGCTGATTTGATTGATGCTCAGACTGATCCAACCTTGGCTCCTTATGCTAAGACAG
GAGAAGTTACCTTACGTCTGTCTACGAAGGCAGAAGATGAGGCAAAAGCTAATCAAAAACTAGACCAATTGGAAAAAGAG
ATTTTATCGAGAAAACAACTTGCTAACTACCTGTATGGCTATGGTGAAGACAATAGTCTGGCCAAGATTGTGACTCGGGA
ATTAGAAGGGCAAGGGATTCGCTTTGCTATTGTGGAAAATAATACAGCTGGAATGCTGCAAGTTGACTTGACACTTTCTT
TACAAAATCGTCAACTTTTTAAAGGCGGTCGAGTAATGACAGACGAGGGGGTAAGTGCTGAAACAGCAGAACAATTTGCA
AGGTCGATCTGTAAAGAGTTAGATGCTGATGTCGGTCTTGTTCTTTTAGGAGGCATAAAACCCGAATCTCAAGTTGATAA
TGTCATGGCAAGCTACTTTATCGCTCTTTCTTTCAATGATCAAGTGACGGTGACAGAAGTTGATTTAGGAGGTTATACAG
AGTTACACATCCGTCAGATTGCCTGTTTACATGCTCTGAATGCTATGCGTAATATTTTGTTAAACCATAAAATTTTGCTA
TAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Competence-damaged protein (CinA)

(308-392)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

64.885

98.25

0.637
  cinA Streptococcus mitis NCTC 12261

57.177

100

0.597
  cinA Streptococcus mitis SK321

56.699

100

0.593
  cinA Streptococcus mutans UA159

56.459

100

0.59
  cinA Streptococcus pneumoniae TIGR4

56.22

100

0.587
  cinA Streptococcus pneumoniae Rx1

55.981

100

0.585
  cinA Streptococcus pneumoniae R6

55.981

100

0.585
  cinA Streptococcus pneumoniae D39

55.742

100

0.583
  cinA Bacillus subtilis subsp. subtilis str. 168

43.734

97.75

0.427

Multiple sequence alignment