Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   CHF41_RS00480 Genome accession   NZ_CP022680
Coordinates   103571..104500 (+) Length   309 a.a.
NCBI ID   WP_119875514.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 98571..109500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS00450 recA 98943..100088 (+) 1146 WP_119875511.1 recombinase RecA Machinery gene
  CHF41_RS00455 spx 100278..100676 (+) 399 WP_075105162.1 transcriptional regulator Spx -
  CHF41_RS00460 - 100855..101121 (+) 267 WP_075099514.1 IreB family regulatory phosphoprotein -
  CHF41_RS00465 ruvX 101121..101540 (+) 420 WP_119875512.1 Holliday junction resolvase RuvX -
  CHF41_RS00470 - 101551..101868 (+) 318 WP_075105164.1 DUF1292 domain-containing protein -
  CHF41_RS00475 - 102027..103283 (-) 1257 WP_119875513.1 ISL3 family transposase -
  CHF41_RS00480 comR 103571..104500 (+) 930 WP_119875514.1 helix-turn-helix domain-containing protein Regulator
  CHF41_RS00485 - 104678..105931 (+) 1254 WP_119875515.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  CHF41_RS00490 - 106438..107985 (+) 1548 WP_119875516.1 quinol oxidase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 36599.83 Da        Isoelectric Point: 8.7035

>NTDB_id=241540 CHF41_RS00480 WP_119875514.1 103571..104500(+) (comR) [Streptococcus respiraculi strain HTS25]
MKKEGFGEKVRRLREKRGWTREQFCNDELDLTVRQLTRIEHGISKPTLTKIFFIARRLGLSLFELMPDYIDLPDQYVKLK
YDILRTPTYNQLDLVEKRNQKLLEIYDHFYDMLPEIERLAIDTLQSTIDVLETQSDTFGKDIINTHIPRIERKKKYDVHD
LLIIRLFIEHAYLSTTAKTATSRKVFLKLVSELPKQVALIEPEDLFVLRNVIFAAIRVLGAKGICEPIPVLLQGIDQIMQ
ITQDFQKYPIFSMLRWKYELLVHRDVKQAYAYCKEALIFARLMGNRHLMEQLHNQWRLDTMDFATFLSC

Nucleotide


Download         Length: 930 bp        

>NTDB_id=241540 CHF41_RS00480 WP_119875514.1 103571..104500(+) (comR) [Streptococcus respiraculi strain HTS25]
ATGAAAAAGGAAGGATTTGGCGAGAAAGTTCGTAGACTACGAGAGAAACGAGGCTGGACGAGAGAGCAATTTTGTAACGA
TGAGCTAGATTTAACTGTACGACAGTTGACACGTATTGAACATGGGATATCGAAGCCCACCTTGACTAAAATATTTTTTA
TTGCGCGTCGTTTAGGCTTGTCGTTGTTTGAGCTGATGCCTGATTATATTGACTTGCCAGATCAGTACGTGAAGCTCAAA
TATGATATTTTGCGTACGCCAACCTATAATCAGCTCGATTTGGTTGAAAAGCGCAATCAGAAGCTGCTTGAAATCTATGA
TCACTTCTACGATATGCTGCCTGAAATCGAGCGACTTGCTATCGATACCTTACAGTCCACCATTGATGTGTTAGAAACCC
AATCAGACACCTTTGGCAAAGATATTATCAATACCCATATTCCCCGAATCGAACGAAAGAAAAAATACGATGTTCATGAT
TTATTAATTATCCGTCTTTTTATTGAACATGCCTACCTGTCAACAACGGCGAAGACTGCTACTAGCAGAAAAGTGTTTTT
AAAGCTGGTATCTGAGTTACCTAAACAGGTGGCGTTGATAGAGCCTGAGGATCTTTTTGTCCTTCGGAATGTCATCTTTG
CTGCTATCCGTGTATTGGGTGCAAAAGGGATCTGTGAACCTATTCCAGTCTTACTTCAAGGGATTGATCAGATCATGCAG
ATTACGCAGGACTTTCAAAAATACCCGATTTTTAGTATGCTTCGGTGGAAATATGAGCTCTTGGTACACCGTGACGTTAA
GCAGGCCTATGCTTATTGTAAGGAAGCACTTATCTTTGCAAGATTAATGGGAAATCGACATCTGATGGAGCAATTGCATA
ATCAGTGGCGACTAGATACAATGGATTTTGCGACATTTTTGTCCTGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(10-65)

ComR tetratricopeptide (ComR_TPR)

(73-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

49.667

97.087

0.482
  comR Streptococcus suis 05ZYH33

49.667

97.087

0.482
  comR Streptococcus suis D9

47

97.087

0.456
  comR Streptococcus mutans UA159

38.591

96.44

0.372

Multiple sequence alignment