Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CDV26_RS00955 Genome accession   NZ_CP022132
Coordinates   170539..171573 (+) Length   344 a.a.
NCBI ID   WP_088771699.1    Uniprot ID   -
Organism   Francisella halioticida strain DSM 23729     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 165539..176573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDV26_RS00920 (CDV26_00920) - 165566..166060 (+) 495 WP_088771693.1 hypothetical protein -
  CDV26_RS00925 (CDV26_00925) - 166134..167185 (+) 1052 Protein_190 alkene reductase -
  CDV26_RS00930 (CDV26_00930) - 167512..167862 (-) 351 WP_088771694.1 (2Fe-2S) ferredoxin domain-containing protein -
  CDV26_RS00935 (CDV26_00935) - 167949..168875 (+) 927 WP_088771695.1 S49 family peptidase -
  CDV26_RS00940 (CDV26_00940) - 168956..169495 (+) 540 WP_088771696.1 OmpH family outer membrane protein -
  CDV26_RS00945 (CDV26_00945) - 169626..170048 (+) 423 WP_088771697.1 rhodanese-like domain-containing protein -
  CDV26_RS00950 (CDV26_00950) secB 170071..170514 (+) 444 WP_088771698.1 protein-export chaperone SecB -
  CDV26_RS00955 (CDV26_00955) recA 170539..171573 (+) 1035 WP_088771699.1 recombinase RecA Machinery gene
  CDV26_RS00960 (CDV26_00960) - 171560..172012 (+) 453 WP_088771700.1 regulatory protein RecX -
  CDV26_RS00965 (CDV26_00965) ssb 172131..172616 (+) 486 WP_088771701.1 single-stranded DNA-binding protein Machinery gene
  CDV26_RS00970 (CDV26_00970) - 172762..173922 (+) 1161 WP_088771702.1 acetate kinase -
  CDV26_RS00975 (CDV26_00975) pta 173932..176019 (+) 2088 WP_088771703.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37407.01 Da        Isoelectric Point: 5.5118

>NTDB_id=237117 CDV26_RS00955 WP_088771699.1 170539..171573(+) (recA) [Francisella halioticida strain DSM 23729]
MSKEKALESALVQIEKQFGKGSVMKLGDQQAIHDIEVVPSGVIALDTALGIGGYPKGRVIEIYGHESSGKTTLTLLAIAQ
CQKQGGIAAFIDAEHALDPKYAKLLGVDVDSLIVSQPDTGEQALEITDMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDS
HMGLQARLMSQALRKLTANIKRSNTLVMFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVRKGSAIKDGTDINGNEI
RVKIVKNKVAPPFKQAEFELIYGEGISLEAELVDLGAKHNIIEKSGAWYSYKGKKIGQGKEKAKDYLKENVEERDEIEKA
ILELLLPHKYAQQDSELATQDELI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=237117 CDV26_RS00955 WP_088771699.1 170539..171573(+) (recA) [Francisella halioticida strain DSM 23729]
ATGAGTAAAGAAAAAGCTCTAGAGTCAGCTCTTGTCCAGATTGAAAAACAGTTTGGTAAAGGTTCTGTCATGAAGCTGGG
AGATCAGCAAGCGATTCATGATATAGAAGTCGTACCATCAGGGGTTATAGCTCTTGATACGGCATTAGGTATTGGGGGGT
ACCCCAAAGGTCGTGTAATAGAAATATATGGTCATGAGTCTTCAGGGAAGACAACGCTTACTTTATTAGCCATTGCACAG
TGTCAAAAACAAGGCGGTATAGCAGCATTTATTGATGCAGAACATGCGCTTGATCCTAAATATGCCAAGCTTCTAGGTGT
TGATGTTGATAGCTTGATCGTTTCTCAACCAGATACGGGTGAGCAGGCTTTAGAAATAACAGATATGCTTGTACGTTCTG
GTGGAGTTGATATAGTTGTTATTGATTCGGTAGCAGCCTTGACGCCAAAAGCTGAAATCGAAGGTGATATGGGAGACTCT
CATATGGGTCTACAGGCAAGGTTAATGTCACAAGCTTTGAGAAAATTAACGGCTAACATTAAGCGCTCAAATACATTAGT
TATGTTTATTAACCAAATCCGTATGAAGATAGGTGTGATGTTTGGTAATCCTGAAACTACTACAGGAGGTAATGCCCTTA
AATTCTACTCATCTGTGCGTTTGGAAGTTAGAAAAGGTAGTGCTATTAAGGATGGTACGGATATTAATGGTAATGAGATC
AGAGTTAAAATTGTAAAAAACAAAGTTGCTCCTCCATTTAAGCAAGCGGAATTTGAGCTTATTTATGGTGAAGGAATCTC
GTTAGAAGCTGAATTGGTTGATCTAGGGGCAAAACATAATATCATAGAAAAATCAGGTGCATGGTATAGTTATAAAGGTA
AAAAAATTGGCCAGGGCAAAGAAAAGGCTAAAGATTATTTAAAAGAGAATGTTGAAGAGCGTGATGAAATAGAAAAAGCG
ATACTTGAGCTTTTATTACCTCATAAATATGCACAACAAGATTCTGAATTAGCTACTCAAGATGAGCTTATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.396

99.128

0.648
  recA Neisseria gonorrhoeae MS11

68.634

93.605

0.642
  recA Neisseria gonorrhoeae MS11

68.634

93.605

0.642
  recA Neisseria gonorrhoeae strain FA1090

68.634

93.605

0.642
  recA Acinetobacter baumannii D1279779

67.692

94.477

0.64
  recA Glaesserella parasuis strain SC1401

68.111

93.895

0.64
  recA Pseudomonas stutzeri DSM 10701

66.768

95.349

0.637
  recA Vibrio cholerae strain A1552

64.497

98.256

0.634
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.497

98.256

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

93.314

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

68.182

89.535

0.61
  recA Streptococcus pneumoniae D39

60.997

99.128

0.605
  recA Streptococcus pneumoniae Rx1

60.997

99.128

0.605
  recA Streptococcus pneumoniae R6

60.997

99.128

0.605
  recA Streptococcus pneumoniae TIGR4

60.997

99.128

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.805

95.349

0.599
  recA Ralstonia pseudosolanacearum GMI1000

65.705

90.698

0.596
  recA Streptococcus mitis NCTC 12261

63.158

93.895

0.593
  recA Streptococcus mitis SK321

62.848

93.895

0.59
  recA Streptococcus mutans UA159

62.654

94.186

0.59
  recA Helicobacter pylori strain NCTC11637

62.422

93.605

0.584
  recA Helicobacter pylori 26695

62.112

93.605

0.581
  recA Streptococcus pyogenes NZ131

61.61

93.895

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

62.54

91.57

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

93.314

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.752

93.895

0.561

Multiple sequence alignment