Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CDV26_RS00965 Genome accession   NZ_CP022132
Coordinates   172131..172616 (+) Length   161 a.a.
NCBI ID   WP_088771701.1    Uniprot ID   -
Organism   Francisella halioticida strain DSM 23729     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 167131..177616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDV26_RS00930 (CDV26_00930) - 167512..167862 (-) 351 WP_088771694.1 (2Fe-2S) ferredoxin domain-containing protein -
  CDV26_RS00935 (CDV26_00935) - 167949..168875 (+) 927 WP_088771695.1 S49 family peptidase -
  CDV26_RS00940 (CDV26_00940) - 168956..169495 (+) 540 WP_088771696.1 OmpH family outer membrane protein -
  CDV26_RS00945 (CDV26_00945) - 169626..170048 (+) 423 WP_088771697.1 rhodanese-like domain-containing protein -
  CDV26_RS00950 (CDV26_00950) secB 170071..170514 (+) 444 WP_088771698.1 protein-export chaperone SecB -
  CDV26_RS00955 (CDV26_00955) recA 170539..171573 (+) 1035 WP_088771699.1 recombinase RecA Machinery gene
  CDV26_RS00960 (CDV26_00960) - 171560..172012 (+) 453 WP_088771700.1 regulatory protein RecX -
  CDV26_RS00965 (CDV26_00965) ssb 172131..172616 (+) 486 WP_088771701.1 single-stranded DNA-binding protein Machinery gene
  CDV26_RS00970 (CDV26_00970) - 172762..173922 (+) 1161 WP_088771702.1 acetate kinase -
  CDV26_RS00975 (CDV26_00975) pta 173932..176019 (+) 2088 WP_088771703.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17910.61 Da        Isoelectric Point: 5.1750

>NTDB_id=237118 CDV26_RS00965 WP_088771701.1 172131..172616(+) (ssb) [Francisella halioticida strain DSM 23729]
MAKGTVNKVILLGRLGNDPEVRTTQNGTVVATLSIATNDGMGENITTEWHRVVVFGKTAEIIQRYSSKGSQLFIEGRLRT
NKWQDKNGNMQYTTEIVANNFQFIGGGNSQGNSNPNYQNSSDSSQQPTSNFNQNQQQPKKQNEMPDFAEINSSNFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=237118 CDV26_RS00965 WP_088771701.1 172131..172616(+) (ssb) [Francisella halioticida strain DSM 23729]
ATGGCCAAAGGGACAGTTAATAAAGTTATTTTACTAGGACGATTAGGTAATGATCCAGAAGTTAGAACTACACAGAATGG
AACTGTTGTAGCTACTTTGAGTATTGCAACTAATGATGGTATGGGAGAAAATATAACTACAGAGTGGCATCGTGTAGTTG
TGTTTGGTAAAACTGCTGAAATTATCCAAAGATATTCTAGCAAAGGCTCACAACTTTTTATTGAAGGTAGATTGCGTACT
AATAAGTGGCAAGATAAAAATGGTAATATGCAATATACAACAGAGATTGTCGCTAATAATTTCCAATTTATTGGAGGTGG
TAATTCGCAGGGAAATTCTAACCCTAATTACCAAAATAGCTCAGACTCTAGTCAGCAGCCAACTAGTAATTTTAATCAAA
ATCAGCAACAACCAAAAAAACAAAATGAGATGCCTGATTTTGCAGAAATTAACTCATCTAATTTTGATGATGATATACCA
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

42.391

100

0.484
  ssb Vibrio cholerae strain A1552

42.135

100

0.466
  ssb Neisseria meningitidis MC58

38.15

100

0.41
  ssb Neisseria gonorrhoeae MS11

37.572

100

0.404

Multiple sequence alignment