Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BUM80_RS07150 Genome accession   NZ_CP018838
Coordinates   1314022..1315188 (-) Length   388 a.a.
NCBI ID   WP_100910916.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1309022..1320188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM80_RS07135 - 1309771..1310572 (+) 802 Protein_1330 IS5 family transposase -
  BUM80_RS07140 (BUM80_07350) lytA 1311205..1312161 (-) 957 WP_000405234.1 N-acetylmuramoyl-L-alanine amidase LytA -
  BUM80_RS07145 (BUM80_07355) - 1312537..1313907 (-) 1371 WP_100910915.1 MATE family efflux transporter -
  BUM80_RS07150 (BUM80_07360) recA 1314022..1315188 (-) 1167 WP_100910916.1 recombinase RecA Machinery gene
  BUM80_RS07155 (BUM80_07365) cinA 1315243..1316499 (-) 1257 WP_100910917.1 competence/damage-inducible protein A Machinery gene
  BUM80_RS07160 (BUM80_07370) brpA 1316577..1317632 (-) 1056 WP_100910918.1 biofilm formation/cell division transcriptional regulator BrpA -
  BUM80_RS07165 (BUM80_07375) - 1317640..1318158 (-) 519 WP_100910919.1 GNAT family N-acetyltransferase -
  BUM80_RS07170 (BUM80_07380) tsaE 1318148..1318591 (-) 444 WP_070528613.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  BUM80_RS07175 (BUM80_07385) comM 1318687..1319319 (-) 633 WP_232708152.1 competence protein Regulator
  BUM80_RS07180 (BUM80_07390) ndk 1319451..1319873 (-) 423 WP_100910921.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41675.37 Da        Isoelectric Point: 4.7155

>NTDB_id=210834 BUM80_RS07150 WP_100910916.1 1314022..1315188(-) (recA) [Streptococcus pneumoniae strain 11A]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
STQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAENPEVFDEIDHQVRVQFGLVDGEEASVEGVETKKDEAVQADSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=210834 BUM80_RS07150 WP_100910916.1 1314022..1315188(-) (recA) [Streptococcus pneumoniae strain 11A]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCAGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCCGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCCTTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATTGAAATTTATGGACCA
GAGTCATCTGGTAAGACAACAGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAGGAAGGTGGGATTGCAGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTTAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGGAAATTGATTGATTCAGGTGCTGTGGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTACCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAATTGGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTACGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTCTACGCCTCAGTGCGTTTGGATGTTCGTGGA
AGTACACAAATCAAGGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAAGAAACCAAGATCAAGGTCGTTAAAAACAA
GGTGGCTCCACCGTTTAAGGAAGCCTTCGTTGAAATCATGTACGGAGAAGGGATTTCTAAAACTGGTGAACTCTTGAAGA
TCGCAAGTGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTACTCTTACAAGGATGAGAAAATTGGGCAGGGTTCTGAA
AATGCTAAGAAATACTTGGCAGAAAACCCAGAAGTCTTTGATGAGATTGACCATCAAGTCCGTGTTCAATTTGGTTTGGT
TGATGGAGAAGAAGCTTCTGTAGAAGGTGTTGAAACTAAAAAAGATGAAGCAGTTCAAGCAGACTCTGTGAATGAAGAAG
TCACACTTGATCTAGGCGACGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

96.907

100

0.969
  recA Streptococcus mitis SK321

96.907

100

0.969
  recA Streptococcus pneumoniae Rx1

94.072

100

0.941
  recA Streptococcus pneumoniae D39

94.072

100

0.941
  recA Streptococcus pneumoniae R6

94.072

100

0.941
  recA Streptococcus pneumoniae TIGR4

94.072

100

0.941
  recA Streptococcus mutans UA159

83.377

99.227

0.827
  recA Streptococcus pyogenes NZ131

90.435

88.918

0.804
  recA Lactococcus lactis subsp. cremoris KW2

78.977

90.722

0.716
  recA Latilactobacillus sakei subsp. sakei 23K

66.197

91.495

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.052

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539
  recA Glaesserella parasuis strain SC1401

61.176

87.629

0.536
  recA Acinetobacter baumannii D1279779

60.831

86.856

0.528
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.89

84.536

0.523
  recA Vibrio cholerae strain A1552

62.229

83.247

0.518
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

83.247

0.518
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Neisseria gonorrhoeae MS11

59.94

85.567

0.513
  recA Neisseria gonorrhoeae MS11

59.94

85.567

0.513
  recA Neisseria gonorrhoeae strain FA1090

59.94

85.567

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.967

84.794

0.5
  recA Pseudomonas stutzeri DSM 10701

58.896

84.021

0.495
  recA Helicobacter pylori 26695

58.055

84.794

0.492
  recA Helicobacter pylori strain NCTC11637

58.055

84.794

0.492
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49

Multiple sequence alignment