Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BUM80_RS07155 Genome accession   NZ_CP018838
Coordinates   1315243..1316499 (-) Length   418 a.a.
NCBI ID   WP_100910917.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11A     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1310243..1321499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM80_RS07140 (BUM80_07350) lytA 1311205..1312161 (-) 957 WP_000405234.1 N-acetylmuramoyl-L-alanine amidase LytA -
  BUM80_RS07145 (BUM80_07355) - 1312537..1313907 (-) 1371 WP_100910915.1 MATE family efflux transporter -
  BUM80_RS07150 (BUM80_07360) recA 1314022..1315188 (-) 1167 WP_100910916.1 recombinase RecA Machinery gene
  BUM80_RS07155 (BUM80_07365) cinA 1315243..1316499 (-) 1257 WP_100910917.1 competence/damage-inducible protein A Machinery gene
  BUM80_RS07160 (BUM80_07370) brpA 1316577..1317632 (-) 1056 WP_100910918.1 biofilm formation/cell division transcriptional regulator BrpA -
  BUM80_RS07165 (BUM80_07375) - 1317640..1318158 (-) 519 WP_100910919.1 GNAT family N-acetyltransferase -
  BUM80_RS07170 (BUM80_07380) tsaE 1318148..1318591 (-) 444 WP_070528613.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  BUM80_RS07175 (BUM80_07385) comM 1318687..1319319 (-) 633 WP_232708152.1 competence protein Regulator
  BUM80_RS07180 (BUM80_07390) ndk 1319451..1319873 (-) 423 WP_100910921.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45138.39 Da        Isoelectric Point: 4.5664

>NTDB_id=210835 BUM80_RS07155 WP_100910917.1 1315243..1316499(-) (cinA) [Streptococcus pneumoniae strain 11A]
MKAEIIAVGTEILTGQIVNTNARFLSEKLAEIGVDVYFQTAVGDNEARILSLLEIASQRSSLVILTGGLGPTEDDLTKQT
LAKFLGKELVFDPQAQEKLDVFFAQRPDYVRTPNNERQAQLVEGATSLPNETGLAVGGILEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIDNQTDPTLAPYAKTGEVTLRLSTKASNQEEANQALDILENQI
LDRQTFEGLSLRDLCYGYGEETSLASIVVEELKKQAKTITAAESLTAGLFQATVADFSGASSIFNGGFVTYSLEEKSKML
DIPAKDLEDHGVVSEFTAQKMAEQARIKTQSYFGISLTGVAGPDSLEGHPAGTVFIGLAQEQGTEVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSN

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=210835 BUM80_RS07155 WP_100910917.1 1315243..1316499(-) (cinA) [Streptococcus pneumoniae strain 11A]
ATGAAAGCAGAAATTATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAATACCAATGCCCGGTTTTTATCAGA
AAAACTAGCAGAGATTGGGGTAGATGTTTATTTTCAGACGGCTGTAGGAGACAATGAAGCTCGTATCTTGTCTTTGCTTG
AGATTGCCAGTCAACGTAGCAGTCTGGTGATTTTGACAGGTGGTTTGGGGCCAACTGAGGACGACTTAACTAAACAAACT
CTGGCTAAATTTTTAGGGAAAGAATTAGTCTTTGATCCTCAGGCTCAGGAGAAGTTAGATGTCTTTTTTGCCCAGCGACC
AGACTATGTCCGAACACCGAATAACGAAAGACAAGCTCAACTTGTAGAAGGGGCGACTTCACTACCGAATGAAACAGGAC
TGGCTGTGGGAGGAATATTGGAAGTCGATGGAGTGACCTACGTTGTCCTTCCAGGTCCACCAAGTGAATTGAAACCCATG
GTCTTAAACCAACTTCTACCCAAGTTGATGACAGGGAGCAAGCTGTATTCCCGAGTTCTTCGTTTCTTTGGAATTGGCGA
AAGTCAGTTGGTGACCATTTTGGCTGATTTAATTGATAATCAAACCGATCCTACCTTGGCACCTTATGCTAAGACAGGAG
AAGTCACTCTGCGTCTGTCAACAAAAGCTAGCAATCAAGAAGAGGCGAATCAGGCGCTGGATATCTTGGAAAATCAAATC
TTGGATCGACAGACTTTTGAAGGACTTTCTTTACGAGACCTTTGTTATGGGTATGGGGAAGAAACTAGTTTAGCCAGCAT
TGTGGTAGAGGAACTGAAAAAACAGGCGAAAACCATCACGGCTGCAGAGAGTTTGACGGCAGGGCTTTTCCAAGCTACTG
TAGCTGATTTTTCAGGTGCTTCAAGTATATTTAATGGTGGTTTTGTAACCTATAGCTTGGAGGAAAAATCAAAGATGTTG
GATATTCCTGCCAAGGATTTGGAAGACCATGGTGTGGTATCTGAATTTACAGCTCAGAAGATGGCTGAGCAGGCACGAAT
CAAGACTCAATCTTATTTTGGCATTAGCTTGACTGGAGTGGCAGGACCAGATAGCCTAGAAGGACACCCAGCTGGGACAG
TCTTTATAGGTTTGGCTCAAGAGCAAGGAACTGAGGTCATCAAGGTGAATATTGGAGGCAGAAGTCGAGCAGATGTACGT
CATATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTAACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

95.215

100

0.952
  cinA Streptococcus mitis NCTC 12261

94.976

100

0.95
  cinA Streptococcus pneumoniae TIGR4

92.584

100

0.926
  cinA Streptococcus pneumoniae Rx1

92.584

100

0.926
  cinA Streptococcus pneumoniae R6

92.584

100

0.926
  cinA Streptococcus pneumoniae D39

92.344

100

0.923
  cinA Streptococcus mutans UA159

70.883

100

0.711
  cinA Streptococcus suis isolate S10

54.087

99.522

0.538
  cinA Bacillus subtilis subsp. subtilis str. 168

45.215

100

0.452

Multiple sequence alignment