Detailed information NTG0197471

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: BH682_RS36735
• Genome accession: NZ_CP017299
• Coordinates: 3907810..3907995 (-)
• Length: 61 a.a.
• NCBI ID: WP_223304542.1
• Uniprot ID: -
• Organism: Rhodococcus sp. YL-1
• Function: DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3902810..3912995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BH682_RS18140	rpsT	3903922..3904182 (+)	261	WP_003944567.1	30S ribosomal protein S20	-
BH682_RS18145	holA	3904479..3905456 (-)	978	WP_003944476.1	DNA polymerase III subunit delta	-
BH682_RS18150	-	3905453..3907813 (-)	2361	WP_075833643.1	ComEC/Rec2 family competence protein	-
BH682_RS36735	comE	3907810..3907995 (-)	186	WP_223304542.1	ComEA family DNA-binding protein	Machinery gene
BH682_RS37200	-	3908159..3908713 (-)	555	Protein_3586	SLBB domain-containing protein	-
BH682_RS18160	-	3908840..3909463 (-)	624	WP_075833645.1	LysE family translocator	-
BH682_RS18165	-	3909662..3910504 (-)	843	WP_075833647.1	DegV family protein	-
BH682_RS18170	octT	3910509..3911291 (-)	783	WP_075833649.1	diglucosylglycerate octanoyltransferase	-
BH682_RS18175	-	3911278..3911952 (-)	675	WP_075833651.1	histidine phosphatase family protein	-
BH682_RS18180	rsfS	3911949..3912395 (-)	447	WP_003944502.1	ribosome silencing factor	-

Sequence

Protein

• Length: 61 a.a.
• Molecular weight: 6434.33 Da
• Isoelectric Point: 4.2898

>NTDB_id=197471 BH682_RS36735 WP_223304542.1 3907810..3907995(-) (comE) [Rhodococcus sp. YL-1]
MNLNTATEAELDELPGVGPVTAAAIISWRTSNGRFTDIEQLGEVDGIGPARLAKLRVLVSV

Nucleotide

• Length: 186 bp

>NTDB_id=197471 BH682_RS36735 WP_223304542.1 3907810..3907995(-) (comE) [Rhodococcus sp. YL-1]
GTGAACCTCAATACCGCCACCGAGGCCGAACTGGACGAGCTTCCCGGGGTAGGGCCGGTAACGGCTGCGGCGATCATCTC
CTGGCGCACCTCCAACGGAAGATTCACGGACATAGAACAATTGGGGGAAGTCGACGGGATCGGCCCGGCAAGGTTGGCCA
AATTGCGAGTGCTGGTGTCGGTGTGA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (2-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Neisseria gonorrhoeae MS11	49.18	100	0.492
comE	Neisseria gonorrhoeae MS11	49.18	100	0.492
comE	Neisseria gonorrhoeae MS11	49.18	100	0.492
comE	Neisseria gonorrhoeae MS11	49.18	100	0.492
comEA/comE1	Glaesserella parasuis strain SC1401	50.877	93.443	0.475
comEA	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.459
comA	Synechocystis sp. PCC 6803	50	91.803	0.459
comE1/comEA	Haemophilus influenzae Rd KW20	47.368	93.443	0.443
comEA	Lactococcus lactis subsp. cremoris KW2	42.623	100	0.426
comEA	Thermus thermophilus HB27	44.643	91.803	0.41
comEA	Vibrio cholerae C6706	47.059	83.607	0.393
comEA	Vibrio cholerae strain A1552	47.059	83.607	0.393
comEA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40	98.361	0.393
comEA	Acinetobacter baylyi ADP1	42.857	91.803	0.393
comEA	Latilactobacillus sakei subsp. sakei 23K	39.344	100	0.393
comEA	Staphylococcus aureus N315	39.344	100	0.393
comEA	Staphylococcus aureus MW2	39.344	100	0.393
comEA/celA/cilE	Streptococcus pneumoniae Rx1	39.344	100	0.393
comEA/celA/cilE	Streptococcus pneumoniae D39	39.344	100	0.393
comEA/celA/cilE	Streptococcus pneumoniae R6	39.344	100	0.393
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	39.344	100	0.393
comEA/celA/cilE	Streptococcus mitis SK321	39.344	100	0.393
comEA/celA/cilE	Streptococcus mitis NCTC 12261	39.344	100	0.393
comEA	Acinetobacter baumannii strain A118	42.593	88.525	0.377
comEA	Legionella pneumophila str. Paris	40.351	93.443	0.377
comEA	Legionella pneumophila strain ERS1305867	40.351	93.443	0.377
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	41.071	91.803	0.377
comEA	Streptococcus thermophilus LMD-9	41.071	91.803	0.377
comEA	Acinetobacter baumannii D1279779	40.741	88.525	0.361