Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLV7A_RS01580 Genome accession   NZ_OZ217344
Coordinates   301805..302971 (+) Length   388 a.a.
NCBI ID   WP_411863410.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 296805..307971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS01555 (SMIE22_02980) comM 297616..298236 (+) 621 WP_049532500.1 hypothetical protein Regulator
  ACLV7A_RS01560 (SMIE22_02990) tsaE 298435..298878 (+) 444 WP_411863408.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACLV7A_RS01565 (SMIE22_03000) - 298868..299386 (+) 519 WP_262081338.1 GNAT family N-acetyltransferase -
  ACLV7A_RS01570 (SMIE22_03010) brpA 299394..300410 (+) 1017 WP_173225226.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACLV7A_RS01575 (SMIE22_03020) cinA 300494..301750 (+) 1257 WP_411863409.1 competence/damage-inducible protein A Machinery gene
  ACLV7A_RS01580 (SMIE22_03030) recA 301805..302971 (+) 1167 WP_411863410.1 recombinase RecA Machinery gene
  ACLV7A_RS01585 (SMIE22_03040) - 303086..304456 (+) 1371 WP_411863411.1 MATE family efflux transporter -
  ACLV7A_RS01590 (SMIE22_03050) - 304832..305782 (+) 951 WP_411863412.1 N-acetylmuramoyl-L-alanine amidase -
  ACLV7A_RS01595 (SMIE22_03060) - 306751..307254 (+) 504 WP_173283570.1 PBECR4 domain-containing protein -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41869.65 Da        Isoelectric Point: 4.8867

>NTDB_id=1170268 ACLV7A_RS01580 WP_411863410.1 301805..302971(+) (recA) [Streptococcus mitis isolate S. mitis E22]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLADHPEIFDEIDKQVRSKFGLIDGEETSEQDTENKKDEPKKEEAVNGEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=1170268 ACLV7A_RS01580 WP_411863410.1 301805..302971(+) (recA) [Streptococcus mitis isolate S. mitis E22]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCCGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCCTTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGGCCA
GAGTCATCTGGTAAGACAACAGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCAGCCTTTATCGA
TGCGGAACATGCCCTCGATCCAGCTTATGCTGCGGCTCTTGGTGTTAACATTGACGAATTGCTCTTGTCACAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAATTGATTGATTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCA
GCCCTTGTACCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCTGGTGGACGTGCTTTGAAATTCTATGCTTCAGTGCGTTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGACCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATCATCAAAAAAGCAGGAGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGATCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAACTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGGAGAAG
TCACCCTTGATCTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae D39

98.969

100

0.99
  recA Streptococcus pneumoniae R6

98.969

100

0.99
  recA Streptococcus pneumoniae TIGR4

98.969

100

0.99
  recA Streptococcus pneumoniae Rx1

98.969

100

0.99
  recA Streptococcus mitis NCTC 12261

94.33

100

0.943
  recA Streptococcus mitis SK321

93.814

100

0.938
  recA Streptococcus mutans UA159

83.117

99.227

0.825
  recA Streptococcus pyogenes NZ131

91.014

88.918

0.809
  recA Lactococcus lactis subsp. cremoris KW2

77.841

90.722

0.706
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

89.175

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

68.485

85.052

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

83.247

0.536
  recA Glaesserella parasuis strain SC1401

60.35

88.402

0.534
  recA Acinetobacter baylyi ADP1

59.13

88.918

0.526
  recA Vibrio cholerae strain A1552

62.539

83.247

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

83.247

0.521
  recA Neisseria gonorrhoeae strain FA1090

59.412

87.629

0.521
  recA Neisseria gonorrhoeae MS11

59.412

87.629

0.521
  recA Neisseria gonorrhoeae MS11

59.412

87.629

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

85.309

0.521
  recA Acinetobacter baumannii D1279779

61.656

84.021

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.529

87.629

0.513
  recA Helicobacter pylori strain NCTC11637

55.84

90.464

0.505
  recA Helicobacter pylori 26695

55.84

90.464

0.505
  recA Pseudomonas stutzeri DSM 10701

59.202

84.021

0.497
  recA Ralstonia pseudosolanacearum GMI1000

59.621

81.701

0.487

Multiple sequence alignment