Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLV65_RS01750 Genome accession   NZ_OZ217342
Coordinates   327777..328943 (+) Length   388 a.a.
NCBI ID   WP_023933324.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322777..333943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS01725 (SMIB22_03330) comM 323588..324208 (+) 621 WP_050222261.1 hypothetical protein Regulator
  ACLV65_RS01730 (SMIB22_03340) tsaE 324407..324850 (+) 444 WP_000288239.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACLV65_RS01735 (SMIB22_03350) - 324840..325358 (+) 519 WP_261202887.1 GNAT family N-acetyltransferase -
  ACLV65_RS01740 (SMIB22_03360) brpA 325366..326382 (+) 1017 WP_000239274.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACLV65_RS01745 (SMIB22_03370) cinA 326466..327722 (+) 1257 WP_411864373.1 competence/damage-inducible protein A Machinery gene
  ACLV65_RS01750 (SMIB22_03380) recA 327777..328943 (+) 1167 WP_023933324.1 recombinase RecA Machinery gene
  ACLV65_RS01755 (SMIB22_03390) - 329164..330534 (+) 1371 WP_411864374.1 MATE family efflux transporter -
  ACLV65_RS01760 (SMIB22_03400) - 330910..331860 (+) 951 WP_000401885.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACLV65_RS01765 (SMIB22_03410) - 332231..332575 (+) 345 WP_001056000.1 helix-turn-helix domain-containing protein -
  ACLV65_RS01770 (SMIB22_03420) - 332588..333334 (+) 747 WP_306291438.1 ImmA/IrrE family metallo-endopeptidase -
  ACLV65_RS01775 (SMIB22_03430) - 333327..333749 (+) 423 Protein_316 hypothetical protein -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41814.53 Da        Isoelectric Point: 4.7762

>NTDB_id=1170100 ACLV65_RS01750 WP_023933324.1 327777..328943(+) (recA) [Streptococcus mitis isolate S. mitis B22]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEAVQADSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=1170100 ACLV65_RS01750 WP_023933324.1 327777..328943(+) (recA) [Streptococcus mitis isolate S. mitis B22]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGGTCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGGCCA
GAGTCATCTGGTAAGACGACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTCGATCCAGCTTATGCTGCGGCTCTTGGGGTTAACATTGACGAATTACTCTTGTCACAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAATTGATTGATTCAGGTGCAGTTGACCTTGTCGTGGTCGACTCAGTTGCG
GCCCTTGTCCCTCGTGCGGAAATTGATGGCGATATCGGAGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
TATGCGTAAGCTCGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGAAATCCAGAAACAACACCTGGTGGACGTGCTCTGAAATTCTATGCTTCAGTGCGTTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGACCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCATTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGAGCTTGGTATTCTTACAAGGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGACGGAGAAGAAGCTTCAGAACAAGATACTGAAAACAAAAAAGATGAGGCAGTTCAAGCAGATTCTGTGAATGAAGAAG
TGACTCTTGACCTAGGCGATGAGCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

97.938

100

0.979
  recA Streptococcus pneumoniae D39

97.938

100

0.979
  recA Streptococcus pneumoniae R6

97.938

100

0.979
  recA Streptococcus pneumoniae TIGR4

97.938

100

0.979
  recA Streptococcus mitis NCTC 12261

95.361

100

0.954
  recA Streptococcus mitis SK321

94.845

100

0.948
  recA Streptococcus mutans UA159

82.857

99.227

0.822
  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807
  recA Lactococcus lactis subsp. cremoris KW2

78.125

90.722

0.709
  recA Latilactobacillus sakei subsp. sakei 23K

66.479

91.495

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.052

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539
  recA Glaesserella parasuis strain SC1401

60.641

88.402

0.536
  recA Vibrio cholerae strain A1552

62.848

83.247

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

83.247

0.523
  recA Acinetobacter baumannii D1279779

61.963

84.021

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

85.309

0.518
  recA Neisseria gonorrhoeae MS11

59.821

86.598

0.518
  recA Neisseria gonorrhoeae strain FA1090

59.821

86.598

0.518
  recA Neisseria gonorrhoeae MS11

59.821

86.598

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Pseudomonas stutzeri DSM 10701

59.509

84.021

0.5
  recA Helicobacter pylori 26695

58.359

84.794

0.495
  recA Helicobacter pylori strain NCTC11637

58.359

84.794

0.495
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49

Multiple sequence alignment