Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   ACLV65_RS01725 Genome accession   NZ_OZ217342
Coordinates   323588..324208 (+) Length   206 a.a.
NCBI ID   WP_050222261.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 318588..329208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS01700 - 318662..318819 (-) 158 Protein_301 competence protein ComA -
  ACLV65_RS01705 (SMIB22_03300) - 318960..319592 (-) 633 WP_411864370.1 ABC transporter ATP-binding protein -
  ACLV65_RS01710 (SMIB22_03310) - 319594..321609 (-) 2016 WP_411864371.1 DUF1430 domain-containing protein -
  ACLV65_RS01715 - 322059..322231 (-) 173 Protein_304 PhrA family quorum-sensing system peptide -
  ACLV65_RS01720 (SMIB22_03320) - 322419..323282 (+) 864 WP_411864372.1 helix-turn-helix domain-containing protein -
  ACLV65_RS01725 (SMIB22_03330) comM 323588..324208 (+) 621 WP_050222261.1 hypothetical protein Regulator
  ACLV65_RS01730 (SMIB22_03340) tsaE 324407..324850 (+) 444 WP_000288239.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACLV65_RS01735 (SMIB22_03350) - 324840..325358 (+) 519 WP_261202887.1 GNAT family N-acetyltransferase -
  ACLV65_RS01740 (SMIB22_03360) brpA 325366..326382 (+) 1017 WP_000239274.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACLV65_RS01745 (SMIB22_03370) cinA 326466..327722 (+) 1257 WP_411864373.1 competence/damage-inducible protein A Machinery gene
  ACLV65_RS01750 (SMIB22_03380) recA 327777..328943 (+) 1167 WP_023933324.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23504.67 Da        Isoelectric Point: 10.1254

>NTDB_id=1170098 ACLV65_RS01725 WP_050222261.1 323588..324208(+) (comM) [Streptococcus mitis isolate S. mitis B22]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSILLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYMRDLLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIATLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1170098 ACLV65_RS01725 WP_050222261.1 323588..324208(+) (comM) [Streptococcus mitis isolate S. mitis B22]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCCTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGTATGGTCTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACTCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCAGTGAAGCTTTTTTACAGTATCCTGCTCTTA
ATAAATTTGTTAGGAGCTGTTCTTGTCTTGTCAGACAACCTGTTCATTAAAAATACACTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACATGCGTGATTTGC
TTGCTATGCTAGATAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTCTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATATTGGACTGGGTTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCTGTTAAAAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGCTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

98.058

100

0.981
  comM Streptococcus pneumoniae R6

98.058

100

0.981
  comM Streptococcus pneumoniae TIGR4

98.058

100

0.981
  comM Streptococcus mitis SK321

38.974

94.66

0.369
  comM Streptococcus mitis NCTC 12261

38.462

94.66

0.364

Multiple sequence alignment