Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLV7Q_RS01540 Genome accession   NZ_OZ217341
Coordinates   291782..292948 (+) Length   388 a.a.
NCBI ID   WP_050234077.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 286782..297948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS01515 (SMIC22_02890) comM 287601..288221 (+) 621 WP_049532500.1 hypothetical protein Regulator
  ACLV7Q_RS01520 (SMIC22_02900) tsaE 288412..288855 (+) 444 WP_218757209.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACLV7Q_RS01525 (SMIC22_02910) - 288845..289363 (+) 519 WP_218757208.1 GNAT family N-acetyltransferase -
  ACLV7Q_RS01530 (SMIC22_02920) brpA 289371..290387 (+) 1017 WP_218757207.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACLV7Q_RS01535 (SMIC22_02930) cinA 290471..291727 (+) 1257 WP_218757206.1 competence/damage-inducible protein A Machinery gene
  ACLV7Q_RS01540 (SMIC22_02940) recA 291782..292948 (+) 1167 WP_050234077.1 recombinase RecA Machinery gene
  ACLV7Q_RS01545 (SMIC22_02950) - 293063..294433 (+) 1371 WP_218757205.1 MATE family efflux transporter -
  ACLV7Q_RS01550 (SMIC22_02960) - 294802..295752 (+) 951 WP_049524692.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACLV7Q_RS01555 (SMIC22_02970) - 296123..296467 (+) 345 WP_050086717.1 helix-turn-helix domain-containing protein -
  ACLV7Q_RS01560 (SMIC22_02980) - 296480..297226 (+) 747 WP_343236525.1 ImmA/IrrE family metallo-endopeptidase -
  ACLV7Q_RS01565 (SMIC22_02990) - 297219..297641 (+) 423 Protein_274 hypothetical protein -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41800.50 Da        Isoelectric Point: 4.7733

>NTDB_id=1170018 ACLV7Q_RS01540 WP_050234077.1 291782..292948(+) (recA) [Streptococcus mitis isolate S. mitis C22]
MAKKPKKLDEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEAVQADSVNEEVTLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=1170018 ACLV7Q_RS01540 WP_050234077.1 291782..292948(+) (recA) [Streptococcus mitis isolate S. mitis C22]
ATGGCGAAAAAACCAAAAAAATTAGATGAAATTTCAAAAAAATTCGGGGCAGAACGTGAAAAAGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTGGCTCTTGACATTGCTCTTGGTTCGGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGACCA
GAGTCATCTGGTAAGACAACAGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCTCTTGGTGTTAACATTGACGAATTGCTCTTGTCACAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCAGGAAAATTGATTGACTCAGGTGCAGTTGACCTTGTCGTGGTCGACTCAGTTGCA
GCCCTTGTACCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCAAGC
CATGCGTAAACTTGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACTCCTGGTGGACGTGCTCTGAAATTCTATGCTTCAGTCCGTTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGACCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAACTCTTGAAGA
TTGCAAGCGACTTGGATATTATCAAAAAAGCAGGAGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGCTTCAGAACAAGATACTGAAAACAAAAAAGATGAAGCAGTTCAAGCAGATTCTGTGAATGAAGAAG
TAACTCTTGACCTAGGCGATGAGCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

97.68

100

0.977
  recA Streptococcus pneumoniae D39

97.68

100

0.977
  recA Streptococcus pneumoniae R6

97.68

100

0.977
  recA Streptococcus pneumoniae TIGR4

97.68

100

0.977
  recA Streptococcus mitis NCTC 12261

95.619

100

0.956
  recA Streptococcus mitis SK321

95.103

100

0.951
  recA Streptococcus mutans UA159

82.597

99.227

0.82
  recA Streptococcus pyogenes NZ131

90.435

88.918

0.804
  recA Lactococcus lactis subsp. cremoris KW2

78.409

90.722

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

66.479

91.495

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.052

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539
  recA Glaesserella parasuis strain SC1401

60.641

88.402

0.536
  recA Vibrio cholerae strain A1552

62.848

83.247

0.523
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

83.247

0.523
  recA Acinetobacter baumannii D1279779

61.963

84.021

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

85.309

0.518
  recA Neisseria gonorrhoeae MS11

59.821

86.598

0.518
  recA Neisseria gonorrhoeae strain FA1090

59.821

86.598

0.518
  recA Neisseria gonorrhoeae MS11

59.821

86.598

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515
  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515
  recA Pseudomonas stutzeri DSM 10701

59.509

84.021

0.5
  recA Helicobacter pylori 26695

58.359

84.794

0.495
  recA Helicobacter pylori strain NCTC11637

58.359

84.794

0.495
  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49

Multiple sequence alignment